View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_17 (Length: 407)
Name: NF15831_low_17
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 18082124 - 18081742
Alignment:
| Q |
17 |
acccttaacacttgacttcttaaacctgcccttgaaggaaaaattagatcagcagcagcatacaacaactatgtaatgataattattcaccaaggcaccc |
116 |
Q |
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| T |
18082124 |
acccttaacacttgacttcttaaacctgcccttgaaggaaaaattagatcagcagcagtatacaacaactatgtaatgataattattcaccaaggcactc |
18082025 |
T |
|
| Q |
117 |
aagctatacatcaaacctgttgtttgttgcacgtaaaacaacaactaaaccttttctaagggagttaattaaatgaatcaatatacgccattaataaacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18082024 |
aagctatacatcaaacctgttgtttgttgcacgtaaaacaacaactaaaccttttctaagggagttaattaaatgaatcaatatacgccattaataaatc |
18081925 |
T |
|
| Q |
217 |
aacaataatctctttatatttcttttgtctagagcattagagcaatttattatctcaaaaacatgtaatcctatttgagatagtgaacatgcaatcctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18081924 |
aacaataatctctttatatttcttttgtctagagcattagagcaatttattatctcaaaaacatgtaatcctatttgagatagtgaacatgcaatcctat |
18081825 |
T |
|
| Q |
317 |
ttgagatagtgaatattttgtgagatagtgaacatgtatctttaggttattatagtaagtttcatagcaactttgcctatgct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18081824 |
ttgagatagtgaatattttgtgagatagtgaacatgtatctttaggttattatagtaagtttcatagcaactttgcctgtgct |
18081742 |
T |
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