View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_19 (Length: 402)
Name: NF15831_low_19
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 44126415 - 44126048
Alignment:
| Q |
18 |
atgaacgatgggttaatgattgaagtgttgattgcacgttgtgtgattctggaacagagggtttgttgcatgttttcttcatatgccccaatagttaaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44126415 |
atgaacgatgggttaatgattgaagtgttgattgcacgttgtgtgattctggaacagagggtttgttgcatgttttcttcatatgccccaatagtcgaac |
44126316 |
T |
|
| Q |
118 |
catttggagaaggactggaattgatgtggatcgaatcagaaattgacttcagaattaggaacagattaacaaagaatttgatgtcgattagcataaaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
44126315 |
catttggagaaggactggaattgatgtggatcgaatcagaaattgacttcagaattaggaacagattaatatagaatttgatgtcgattagcataaaatt |
44126216 |
T |
|
| Q |
218 |
agaagg--nnnnnnnnttgaaagtcagagtggagtggttgcggtgggagttgaagcaggttcctttgttaataaaacaatgcgcgtctgatgtttttctt |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||| | |
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| T |
44126215 |
agaaggaaaaaaaaaattgaaagtcagagtggagtggttgcggtgggagttgaagcaggttcctttgttaataaaacaatacac-tgtgatgtttttcct |
44126117 |
T |
|
| Q |
316 |
atcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat |
384 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
44126116 |
atcaagttgctaacccatcaaaaacaaagaattagaaaaacaaaaggtgaataggataggattagaaat |
44126048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 36625538 - 36625601
Alignment:
| Q |
315 |
tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggatt |
378 |
Q |
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||||| ||||||||| || |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
36625538 |
tatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggatt |
36625601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 33451444 - 33451377
Alignment:
| Q |
307 |
gtttttcttatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggatag |
374 |
Q |
| |
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|||| |||||||| |||| |||| |||||||||| |||||||| || ||||||| |||||||||||| |
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| T |
33451444 |
gtttatcttatcatgttgttaacccatcaaaaactaaggattataattacaaaggatgaataggatag |
33451377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 557200 - 556823
Alignment:
| Q |
18 |
atgaacgatgggttaatgattgaagtgttgattgcacgttgtgtgattctggaacagagggtttgttgcatgttttcttcatatgccccaatagttaaac |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |
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| T |
557200 |
atgaacgatgggttaacgattgaagtgttgattgcacattgtgtaattctggaacagagggtttgttgcatgttttcttcatatatccc-atagtcgaac |
557102 |
T |
|
| Q |
118 |
catttggagaaggactggaattgatg-tggatcgaatcagaaattgacttcagaattaggaacagattaacaaagaatttgatgtcgattagcataaaat |
216 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
557101 |
catttggaaaaggactggaattgatgttggatcgaatcagaaattggcttcagaattaggaatagattaacatagaatttgatgtcgattagcataaaat |
557002 |
T |
|
| Q |
217 |
tagaaggnnnnnnnnttgaaagtcagagtg----------gagtggttgcggtgggagttgaagcaggttcctttgttaataaaacaatgcgcgtctgat |
306 |
Q |
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||||| | ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
557001 |
tagaaag-aaaaaaattgaaagtcagagtggagtggagttgagtggttgcagtgggagttgaagcgggttcctttgttaataaaacaatacgcgtgtgat |
556903 |
T |
|
| Q |
307 |
gtttttcttatcaagttgctaactcatc--aaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat |
384 |
Q |
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||||| ||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
556902 |
gttttaactatcatgttgctaacccaccaaaaaaacaaaggattagaaaaacaaagggtgaataggatatgattagaaat |
556823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 9028636 - 9028705
Alignment:
| Q |
315 |
tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat |
384 |
Q |
| |
|
||||| ||||||||| |||||||||| |||||| |||| ||||||| | |||||||||||||||||||| |
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| T |
9028636 |
tatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaat |
9028705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 384
Target Start/End: Complemental strand, 51976340 - 51976232
Alignment:
| Q |
276 |
tcctttgttaataaaacaatgcgcgtctgatgtttttcttatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggatagg |
375 |
Q |
| |
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|||||||||||||||||||| || || |||||||||| ||||| |||| |||| || ||||| |||||||||||||||||| ||||||||||||| | |
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| T |
51976340 |
tcctttgttaataaaacaatacgtgtgtgatgtttttactatcaggttgttaacccaccaaaattcaaggattagaaaaacaaatggtgaataggataag |
51976241 |
T |
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| Q |
376 |
attaaaaat |
384 |
Q |
| |
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|||| |||| |
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| T |
51976240 |
attagaaat |
51976232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 19806758 - 19806827
Alignment:
| Q |
315 |
tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat |
384 |
Q |
| |
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||||| |||| |||| || ||||||| ||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
19806758 |
tatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaat |
19806827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 4076367 - 4076412
Alignment:
| Q |
334 |
caaaaacaaaggattagaaaaacaaagggtgaataggataggatta |
379 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
4076367 |
caaaaactaaggattagaaaaacaaagagtgaataggataggatta |
4076412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 9383229 - 9383298
Alignment:
| Q |
315 |
tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat |
384 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||| | || |||||||||||| ||||||| ||||| |||| |
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| T |
9383229 |
tatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaat |
9383298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 129102 - 129172
Alignment:
| Q |
316 |
atcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaatga |
386 |
Q |
| |
|
|||| ||||||| | |||||||||| || ||| | || ||||||||||||||| ||||||||||||||||| |
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|
| T |
129102 |
atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatga |
129172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 41482422 - 41482491
Alignment:
| Q |
315 |
tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat |
384 |
Q |
| |
|
||||| ||||||||| || ||||||| |||||| | || |||||||||||| ||||||| |||||||||| |
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|
| T |
41482422 |
tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaat |
41482491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 24429803 - 24429734
Alignment:
| Q |
315 |
tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat |
384 |
Q |
| |
|
||||| ||||||||| || ||||||| |||||| | || |||||||||||| || |||||||||| |||| |
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|
| T |
24429803 |
tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaat |
24429734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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