View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_2 (Length: 577)
Name: NF15831_low_2
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_2 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 36734362 - 36734923
Alignment:
| Q |
1 |
attaaggatctacttgatattttattggatattcttgaagatgagagctctgaaatcaaattgaaaatggagaacataaaagccttcatcttggtaagtg |
100 |
Q |
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| T |
36734362 |
attaaggatctacttgatattttattggatattcttgaagatgagagctctgaaatcaaattgaaaatggagaacataaaagccttcatcttggtaagtg |
36734461 |
T |
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| Q |
101 |
acaagtgactcagatttacattatatgcactc------gtattttgattttgtttttaaaatataattggcgaacttgaaacatgaaacttcttatctta |
194 |
Q |
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| T |
36734462 |
acaagtgactcagatttacattatatgcactctagatcgtattttgattttgtttttaaaatataattggcgaacttgaaacatgaaacttcttatcttg |
36734561 |
T |
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| Q |
195 |
atctaacagccgtgatcattgattgacttacatagtcgatatctagttgagtctatgaacaatattgcatttttcttttattcacttatacaatgccaaa |
294 |
Q |
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| T |
36734562 |
atctaacggccgtgatcattgattgacttaaatagtcgatatctagttacgtctacgaccaatattgcattttccttttatttacttatacaatgccaaa |
36734661 |
T |
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| Q |
295 |
cttgaaagaaagnnnnnnnnnnctagctacactataataattgttgcactaactttttaagtaaatacgataatagattctttttaaaacaatcatcaat |
394 |
Q |
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| T |
36734662 |
cttgaaagaaa----aaaaaaactagctacactgtaataattgttgcactaactctttaagtaaatacgataatagattctttttaaaacaatcatcgat |
36734757 |
T |
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| Q |
395 |
catacttaacttactgcgcccatattttagatcacaaatgccttttctctttggatcacttgactttctaatctaaattttttatatgcttaaagtaaat |
494 |
Q |
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| T |
36734758 |
catacttaacttactgcgtccatattttagatcacaaatgctttttctctttggatcacttgactttctaatctaaattttttatatgcttaaagtaaat |
36734857 |
T |
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| Q |
495 |
atcaataactcatgcttaaagtgttgtgcttgtcttctaatctaaacatttta-gacaattatacc |
559 |
Q |
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| T |
36734858 |
atcaataactcatgcttaaagtgttgtgcttgtcttctaatctaaacattttatgacaattatacc |
36734923 |
T |
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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 24587 - 24649
Alignment:
| Q |
2 |
ttaaggatctacttgatattttattggatattcttgaagatgagagctctgaaatcaaattga |
64 |
Q |
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|||||||| | ||||||||||| ||||| |||| ||||||||||||| |||||| ||||||| |
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| T |
24587 |
ttaaggatttgcttgatattttgttggaaattcatgaagatgagagcagtgaaataaaattga |
24649 |
T |
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