View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_20 (Length: 393)
Name: NF15831_low_20
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 34658921 - 34658557
Alignment:
| Q |
13 |
aaaattacaacttctgaaaacttaaccttgagaaggcgatcgatgtctttattgaagacactaaatgggcgcatcttagctgaagagaaagaaattgaag |
112 |
Q |
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| T |
34658921 |
aaaattacaacttctgagaccttaaccttgagaaggcgat----gtctttattgaagacactaaatggga-catcttagctgaagagaaagaaattgaag |
34658827 |
T |
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| Q |
113 |
gaatgttgtttgaaatgcccgctt-aagacatggagaaacatcttgagccttcattcgtcaaagctccattaacagtatgatgtttagccgagtcgttgt |
211 |
Q |
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| T |
34658826 |
gaatgttgtttgaaaagcccgctttaagacatggagaaacatcttgagccttcattcgtcaaagctccattaacagtatgatgtttagccgagtcgttgt |
34658727 |
T |
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| Q |
212 |
agatgatggtactctcctacaagttatgccacttctaacattaaagaagttaggtaaaaatatcaaggatttgatcccaaccaacataaaaatggctagc |
311 |
Q |
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| T |
34658726 |
agatgatggtactctcctacaagttatgccacttctaacattaaagaagttaggtaaaaatatcaaggatttgatcccaaccaacataaaaatggctagc |
34658627 |
T |
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| Q |
312 |
ttcatgggtgaagcgtctaatgcacttttagttatcaaat------atgtcgtgggaccaaaggaggtac |
375 |
Q |
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| T |
34658626 |
ttcatggttgaagcgtctaatgcacttttagttatcatatttgatgttgtcgtgggaccaaaggaggtac |
34658557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 46305492 - 46305533
Alignment:
| Q |
282 |
ttgatcccaaccaacataaaaatggctagcttcatgggtgaa |
323 |
Q |
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| T |
46305492 |
ttgatcccaaccaacatgaaaatggctatcttcatgggtgaa |
46305533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 46025852 - 46025811
Alignment:
| Q |
282 |
ttgatcccaaccaacataaaaatggctagcttcatgggtgaa |
323 |
Q |
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|||||||||||||| || |||||||||||||||| ||||||| |
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| T |
46025852 |
ttgatcccaaccaatatgaaaatggctagcttcacgggtgaa |
46025811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 46261805 - 46261846
Alignment:
| Q |
282 |
ttgatcccaaccaacataaaaatggctagcttcatgggtgaa |
323 |
Q |
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|||||||||||||| || |||||||||||||||| ||||||| |
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| T |
46261805 |
ttgatcccaaccaatatgaaaatggctagcttcacgggtgaa |
46261846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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