View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_22 (Length: 375)
Name: NF15831_low_22
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 9e-89; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 167 - 359
Target Start/End: Complemental strand, 25659226 - 25659037
Alignment:
| Q |
167 |
gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa |
266 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25659226 |
gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa |
25659130 |
T |
|
| Q |
267 |
tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
359 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25659129 |
tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
25659037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 167 - 359
Target Start/End: Complemental strand, 25665631 - 25665442
Alignment:
| Q |
167 |
gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa |
266 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25665631 |
gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa |
25665535 |
T |
|
| Q |
267 |
tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
359 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25665534 |
tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
25665442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 167 - 359
Target Start/End: Complemental strand, 25672036 - 25671847
Alignment:
| Q |
167 |
gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25672036 |
gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa |
25671940 |
T |
|
| Q |
267 |
tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
359 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671939 |
tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
25671847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 167 - 359
Target Start/End: Complemental strand, 25678441 - 25678252
Alignment:
| Q |
167 |
gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25678441 |
gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa |
25678345 |
T |
|
| Q |
267 |
tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
359 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25678344 |
tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
25678252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 167 - 359
Target Start/End: Complemental strand, 25685121 - 25684928
Alignment:
| Q |
167 |
gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtacta---tatccaaccacttttggta |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25685121 |
gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtaggagactagcccattgtactactatatccaaccacttttggta |
25685024 |
T |
|
| Q |
264 |
aaatgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
359 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25685023 |
aaatgatgtatgaagtgcaacttttttcttaaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaact |
25684928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 25659485 - 25659353
Alignment:
| Q |
35 |
atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |
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| T |
25659485 |
atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc |
25659386 |
T |
|
| Q |
135 |
attcgattttcaatgataaattgttttttggag |
167 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
25659385 |
attcgattttcaatgataaattattttttggag |
25659353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 25665890 - 25665758
Alignment:
| Q |
35 |
atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |
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|
| T |
25665890 |
atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc |
25665791 |
T |
|
| Q |
135 |
attcgattttcaatgataaattgttttttggag |
167 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
25665790 |
attcgattttcaatgataaattattttttggag |
25665758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 25672295 - 25672163
Alignment:
| Q |
35 |
atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |
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|
| T |
25672295 |
atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc |
25672196 |
T |
|
| Q |
135 |
attcgattttcaatgataaattgttttttggag |
167 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
25672195 |
attcgattttcaatgataaattattttttggag |
25672163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 25678710 - 25678568
Alignment:
| Q |
25 |
agttttaatgatatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaa |
124 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
25678710 |
agtttcaaagatatattatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattactttttaaagaatattgaagaa |
25678611 |
T |
|
| Q |
125 |
tacatattgcattcgattttcaatgataaattgttttttggag |
167 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
25678610 |
tacatatttcattcgattttcaatgataaattattttttggag |
25678568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 13002589 - 13002647
Alignment:
| Q |
297 |
caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc |
355 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||| || ||||||| ||||||||||||||| |
|
|
| T |
13002589 |
caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttc |
13002647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 31252997 - 31252939
Alignment:
| Q |
297 |
caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc |
355 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||| || ||||||| ||||||||||||||| |
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|
| T |
31252997 |
caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttc |
31252939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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