View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_23 (Length: 374)
Name: NF15831_low_23
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 79 - 352
Target Start/End: Complemental strand, 22945509 - 22945236
Alignment:
| Q |
79 |
gagtaaaattctttaggcttttttccttcctgtttgtattctggcgctttccggcttcctgcatttgagaaatcatacttagagccacaacataatctcc |
178 |
Q |
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| T |
22945509 |
gagtaaaattctttaggcttttttccttcctgtttgtattctggcgctttccggcttcctgcatttgagaaatcatacttagagccacaacataatctca |
22945410 |
T |
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| Q |
179 |
attggcaacatacccacgaaacatagaattccaaaatgccaagctttacgaaacaggttctctgccaaaactaattagtttatacatatttgtaattttg |
278 |
Q |
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| T |
22945409 |
attggcaacatacccacgaaacatagaattccaaaatgccaagctttatgaaacaggttctatgccaaaaataattagtttatacatagttgtaattttg |
22945310 |
T |
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| Q |
279 |
cgcctgcatatcacacttaattttttactgaagaggtttgtataatgagaatttctctgtcaaccatgatcatt |
352 |
Q |
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| T |
22945309 |
cgcccgcatatcacacttaattttttactgaagaggtttgtataatgagaatttctctgtcaaccatcatcatt |
22945236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 32816251 - 32816155
Alignment:
| Q |
138 |
tgcatttgagaaatcatacttagagccacaacataatctccattggcaacatacccacgaaacatagaattccaaaatgccaagctttacgaaacag |
234 |
Q |
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| T |
32816251 |
tgcatatgagaaatcatactgagagcctcaacataatctccattgacaacatgcccagaaagcatcgaattccatagtgccaagctttccgaaacag |
32816155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 22945668 - 22945619
Alignment:
| Q |
11 |
atcatcaacaccaatgaattagacatattttagacaagtttcaagagcttt |
61 |
Q |
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| T |
22945668 |
atcatcaacaccaatgaatt-gacatattttagacaagtttcaagagcttt |
22945619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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