View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15831_low_25 (Length: 353)

Name: NF15831_low_25
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15831_low_25
NF15831_low_25
[»] chr8 (10 HSPs)
chr8 (20-348)||(15722266-15722594)
chr8 (20-342)||(15697045-15697378)
chr8 (22-342)||(15703436-15703757)
chr8 (20-283)||(15805098-15805358)
chr8 (30-185)||(15711726-15711881)
chr8 (20-165)||(15764117-15764262)
chr8 (20-165)||(15812939-15813084)
chr8 (22-165)||(15799555-15799698)
chr8 (251-342)||(15799794-15799885)
chr8 (248-342)||(15711952-15712046)
[»] chr3 (8 HSPs)
chr3 (91-180)||(3103468-3103557)
chr3 (23-170)||(3080667-3080814)
chr3 (23-170)||(3095104-3095251)
chr3 (308-345)||(3080481-3080518)
chr3 (308-345)||(3094918-3094955)
chr3 (91-180)||(3122999-3123088)
chr3 (308-345)||(4548013-4548050)
chr3 (46-162)||(4547727-4547843)
[»] chr5 (1 HSPs)
chr5 (306-342)||(470063-470099)
[»] chr2 (1 HSPs)
chr2 (91-155)||(2681814-2681878)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 15722266 - 15722594
Alignment:
Q  20 aatagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722266 aatagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatt 15722365  T
Q  120 taactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaatgttagttgtaagattatggggaattttctaata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722366 taactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaatgttagttgtaagattatggggaattttctaata 15722465  T
Q  220 tttggttcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaattttcttgccaaacca 319  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722466 tttgattcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaattttcttgccaaacca 15722565  T
Q  320 aaatcagatatttttggattcatctcact 348  Q
    ||||| ||||||||||||||||| |||||    
T  15722566 aaatctgatatttttggattcatttcact 15722594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 15697045 - 15697378
Alignment:
Q  20 aatagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatt 119  Q
    |||||||||||||||||||| || || || | |||||||||||| ||||||||||| |  |||||||||| |||||||||||||||  ||||||||||||    
T  15697045 aatagaagactttgcctatgttctgaaagtatgaattcaccattcctttttccatacacaatttctaatacaagaactccaaagctgaaaacatcggatt 15697144  T
Q  120 taactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaatgtt-----------agttgtaagattatgggga 208  Q
    | |||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||| || |  ||           |||||| | |||||| | |    
T  15697145 tcactgaaaataatccagccatagcatattctggagccatgtatccgctgtttaaagtcaaaagtacattgtcagactcagagttgtga-attatgtgaa 15697243  T
Q  209 attttctaatatttggttcagaaaagaattgccaat-aatacttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaatttt 307  Q
     |||||||||||||| || | || ||| |||||||| || ||||||||||| |||| |||||||||||||||||||| | || | ||  ||||||||||     
T  15697244 cttttctaatatttgtttgaaaatagagttgccaataaacacttactaggtgccaataactctttttgtttttgtctgactttgacctttttcaaatttc 15697343  T
Q  308 cttgccaaaccaaaatcagatatttttggattcat 342  Q
    ||||| || |||||||| |||||||| ||||||||    
T  15697344 cttgctaatccaaaatctgatattttcggattcat 15697378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 342
Target Start/End: Original strand, 15703436 - 15703757
Alignment:
Q  22 tagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggattta 121  Q
    ||||||||||| |||||| ||  | ||||||||| |||  || ||||| ||||||| ||||||||||| ||| |||||||||||| ||||||| |||||     
T  15703436 tagaagactttccctatgatccaaaagaaagaatccactgttccttttcccataaacgatttctaataaaagtactccaaagctaaaaacatcagatttc 15703535  T
Q  122 actgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatag---aatgttagttgtaagattatggggaattttctaat 218  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||  | ||   | |||||||||  | || |||   |||||||||||    
T  15703536 actgaaaataatccagccatagcatattctggagccatgtatccgctgtttaaaatgcacagatcactgttagttgcga-ataatgtaaaattttctaat 15703634  T
Q  219 atttggttcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaattttcttgccaaacc 318  Q
    ||||| || | |||||| ||| |||||| |||| |||||| || | |||||||||||||| ||||| | || | ||  | ||||||||||||||||| ||    
T  15703635 atttgtttta-aaaagagttgtcaataacacttgctaggttcccataactctttttgtttctgtctgactttggcctttctcaaattttcttgccaatcc 15703733  T
Q  319 aaaatcagatatttttggattcat 342  Q
    |||||| |||||||||||||||||    
T  15703734 aaaatctgatatttttggattcat 15703757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 15805098 - 15805358
Alignment:
Q  20 aatagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatt 119  Q
    ||||||||||||||| |||| || || ||||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| ||||||||||||    
T  15805098 aatagaagactttgcatatgctctgaaagaaagaattcgccatttctttttccgtaaataatttctaatacaagaactccaaagctaaaaacatcggatt 15805197  T
Q  120 taactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaatgttagttgtaagattatggggaattttctaata 219  Q
    | |||||||| |  ||| |||||||||||||||||||||||||||| |||| |||||| || | | ||| |||||| | || ||| | || ||| |||||    
T  15805198 tcactgaaaataagccagccatagcatattctggagccatgtatccactgtataaaattaaaatactgtcagttgtga-atcatgtgaaaatttataata 15805296  T
Q  220 tttggttcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtc 283  Q
    |||| ||  ||||| | || |||||||| |||||||||| |||| |||||||| ||||||||||    
T  15805297 tttgctt-tgaaaa-actttccaataatgcttactaggtgccaaaaactctttctgtttttgtc 15805358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 15711726 - 15711881
Alignment:
Q  30 tttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatttaactgaaaa 129  Q
    |||||||||| || || ||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| | ||||| || || ||||||||    
T  15711726 tttgcctatgttctgaaagaaagaattctccatttctttttccataaactatttctaatataagaactccaaagctaaatacatcagacttcactgaaaa 15711825  T
Q  130 cactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaa 185  Q
     |  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15711826 taacccagccatagcatattctggagccatgtatccgctatttaaaatcaatagaa 15711881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 15764117 - 15764262
Alignment:
Q  20 aatagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatt 119  Q
    ||||||||||||||| |||| || || ||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||| ||  ||||||||||||    
T  15764117 aatagaagactttgcatatgttctgaaagaaagaattctccatttctttttccatacactatttctaatataagaactccaaaactgaaaacatcggatt 15764216  T
Q  120 taactgaaaacactccaaccatagcatattctggagccatgtatcc 165  Q
    | || ||||| |  ||| ||||||||||||||||||||||||||||    
T  15764217 tcaccgaaaataacccagccatagcatattctggagccatgtatcc 15764262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 15812939 - 15813084
Alignment:
Q  20 aatagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatt 119  Q
    ||||||||||||||| |||| || || |||||||| || |||||||||||||||||||| || ||||| | |||||||||||||||  ||||||||||||    
T  15812939 aatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaattatctctaacacaagaactccaaagctgaaaacatcggatt 15813038  T
Q  120 taactgaaaacactccaaccatagcatattctggagccatgtatcc 165  Q
    | |||||||| |  ||| ||||||| ||||||||||||||||||||    
T  15813039 tcactgaaaataacccagccatagcgtattctggagccatgtatcc 15813084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 15799555 - 15799698
Alignment:
Q  22 tagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggattta 121  Q
    ||||||||||||| |||| || || |||||||| || |||||||||||||| || || |||||||| | |||||||||||||||  |||||||||||||     
T  15799555 tagaagactttgcatatgttctgaaagaaagaagtcgccatttctttttccgtatattatttctaacacaagaactccaaagctgaaaacatcggatttc 15799654  T
Q  122 actgaaaacactccaaccatagcatattctggagccatgtatcc 165  Q
    |||||||| |  ||| ||||||| ||||| ||||||||||||||    
T  15799655 actgaaaataacccagccatagcgtattcaggagccatgtatcc 15799698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 15799794 - 15799885
Alignment:
Q  251 tactaggtaccaacaactctttttgtttttgtctca-attcgtccgctttcaaattttcttgccaaaccaaaatcagatatttttggattcat 342  Q
    |||||||| |||| |||||||||||||||||||| | ||| |||   | |||||| |||||||||| |||||||| |||||||||||||||||    
T  15799794 tactaggtgccaaaaactctttttgtttttgtctgacattggtctt-tatcaaatgttcttgccaatccaaaatctgatatttttggattcat 15799885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 15711952 - 15712046
Alignment:
Q  248 acttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaattttcttgccaaaccaaaatcagatatttttggattcat 342  Q
    ||||||||||| || |  ||||||||||||| ||||| | || | ||  |||||||  |||||||||| ||||| || |||||||||||||||||    
T  15711952 acttactaggttcccatgactctttttgtttctgtctgactttggcctttttcaaaccttcttgccaatccaaagtctgatatttttggattcat 15712046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 3103557 - 3103468
Alignment:
Q  91 aagaactccaaagctataaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaa 180  Q
    |||||| ||||||||  ||||||| || || |||||||||| |||  |||||||||||||||||||||| ||||| ||| | ||||||||    
T  3103557 aagaacaccaaagctgaaaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccactgctcaaaatcaa 3103468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 3080814 - 3080667
Alignment:
Q  23 agaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatttaa 122  Q
    ||||||||||| | ||| || | |||| ||||| ||||||| ||| ||||  |||| |||||||||| |||||||||||||||  ||||||| ||||| |    
T  3080814 agaagactttgaccatgctccgcgagatagaatccaccattccttcttccgcaaattatttctaataaaagaactccaaagctgaaaacatcagatttca 3080715  T
Q  123 ctgaaaacactccaaccatagcatattctggagccatgtatccgctgt 170  Q
    | ||| | |  ||  ||||||| || ||||| ||||||||||| ||||    
T  3080714 cagaatataacccttccatagcgtactctggtgccatgtatccactgt 3080667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 3095251 - 3095104
Alignment:
Q  23 agaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatttaa 122  Q
    ||||||||||| | ||| || | |||| ||||| ||||||| ||| ||||  |||| |||||||||| |||||||||||||||  ||||||| ||||| |    
T  3095251 agaagactttgaccatgctccgcgagatagaatccaccattccttcttccgcaaattatttctaataaaagaactccaaagctgaaaacatcagatttca 3095152  T
Q  123 ctgaaaacactccaaccatagcatattctggagccatgtatccgctgt 170  Q
    | ||| | |  ||  ||||||| || ||||| ||||||||||| ||||    
T  3095151 cagaatataacccttccatagcgtactctggtgccatgtatccactgt 3095104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 3080518 - 3080481
Alignment:
Q  308 cttgccaaaccaaaatcagatatttttggattcatctc 345  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3080518 cttgccaatccaaaatcagatatttttggattcatctc 3080481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 3094955 - 3094918
Alignment:
Q  308 cttgccaaaccaaaatcagatatttttggattcatctc 345  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3094955 cttgccaatccaaaatcagatatttttggattcatctc 3094918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 3123088 - 3122999
Alignment:
Q  91 aagaactccaaagctataaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaa 180  Q
    |||||| ||||||||  ||||||| || || ||||||||||  ||  | |||||||||||||||||||||||||| ||| | ||||||||    
T  3123088 aagaacgccaaagctgaaaacatctgacttcactgaaaacaagccttcgatagcatattctggagccatgtatccactgctcaaaatcaa 3122999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 4548013 - 4548050
Alignment:
Q  308 cttgccaaaccaaaatcagatatttttggattcatctc 345  Q
    |||||||| |||||||||||||||||||||||||||||    
T  4548013 cttgccaatccaaaatcagatatttttggattcatctc 4548050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 4547727 - 4547843
Alignment:
Q  46 gagaaagaattcaccatttctttttccataaatgatttctaatataagaactccaaagctataaacatcggatttaactgaaaacactccaaccatagca 145  Q
    |||| ||||| |||||||  |||||||| |||| |||||||||| |||||||||| | ||  ||||||| | ||| |||||| | |  ||  |||||||     
T  4547727 gagatagaatccaccattcttttttccacaaattatttctaataaaagaactccataactgaaaacatctgttttcactgaatataacccttccatagcg 4547826  T
Q  146 tattctggagccatgta 162  Q
    |||||||||||||||||    
T  4547827 tattctggagccatgta 4547843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 470063 - 470099
Alignment:
Q  306 ttcttgccaaaccaaaatcagatatttttggattcat 342  Q
    ||||||||||||||||||| |||||||||||||||||    
T  470063 ttcttgccaaaccaaaatctgatatttttggattcat 470099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 2681814 - 2681878
Alignment:
Q  91 aagaactccaaagctataaacatcggatttaactgaaaacactccaaccatagcatattctggag 155  Q
    |||||||||||||||| ||||||| ||||||||||| ||   |||  ||||||||||||| ||||    
T  2681814 aagaactccaaagctaaaaacatctgatttaactgagaagtttccgtccatagcatattcaggag 2681878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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