View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_26 (Length: 328)
Name: NF15831_low_26
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 7763267 - 7762956
Alignment:
| Q |
1 |
cgatcaaaacatcaacatcggtgatgaaatcagaacttcacttctaaaagcaattgaagcttctagaatctcaattgttgtactctgcaaagattatgct |
100 |
Q |
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| T |
7763267 |
cgatcaaaacatcaacatcggtgatgaaatcggaacttcacttctaaaagcaattgaagcttctagaatctcaatcgttgtgttgtgccgtgattatgct |
7763168 |
T |
|
| Q |
101 |
tcttccacttggtgccttgatgaactagtcaagatcgttgactgttatgacaaaaatagaaaatcagtatttgttattttttataagatagaaccttcag |
200 |
Q |
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| T |
7763167 |
tcttccacttggtgccttgatgaactagtcaagatcgttgactgttatgacaaaaatagaaaatcagtatttgttattttttataagatagaaccttcag |
7763068 |
T |
|
| Q |
201 |
atgttaggta-tcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagatttggaaaggaatcggagaaggtgaaagcatggaggttggctt |
299 |
Q |
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| T |
7763067 |
atgttaggtagtcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagatttggaaaggaatcggagaaggtgaaagcatggaggttggctt |
7762968 |
T |
|
| Q |
300 |
tgaatcgtgttt |
311 |
Q |
| |
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|||||||||||| |
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| T |
7762967 |
tgaatcgtgttt |
7762956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 311
Target Start/End: Complemental strand, 7755807 - 7755503
Alignment:
| Q |
5 |
caaaacatcaacatcggtgatgaaatcagaacttcacttctaaaagcaattgaagcttctagaatctcaattgttgtactctgcaaagattatgcttctt |
104 |
Q |
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| T |
7755807 |
caaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaagaatatgcttctt |
7755708 |
T |
|
| Q |
105 |
ccacttggtgccttgatgaactagtcaagatcgttgactgttatgacaaaaatagaaaatcagtatttgttattttttataagatagaaccttcagatgt |
204 |
Q |
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| T |
7755707 |
caacttggtgccttgatgaacttgttaagatcgttgactgttatgaaaataatggaaaatcggttttcgtta-tatttat-agatggaacctagcgatgt |
7755610 |
T |
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| Q |
205 |
taggtatcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagatttggaaaggaatcggagaaggtgaaagcatggaggttggctttgaat |
304 |
Q |
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||||||||||| |||||||||||| ||| || | |||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
7755609 |
taggtatcagaaaaatagttatgaagatgctattaggaaacatgaaaagagatttggaagggaatcggagaaggtgaaagcatggaagttggctttgaat |
7755510 |
T |
|
| Q |
305 |
cgtgttt |
311 |
Q |
| |
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|| |||| |
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| T |
7755509 |
cgagttt |
7755503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 7839925 - 7839633
Alignment:
| Q |
14 |
aacatcggtgatgaaatcagaacttcacttctaaaagcaattgaagcttctagaatctcaattgttgtactctgcaaagattatgcttcttccacttggt |
113 |
Q |
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|||||||| || ||||||||| |||||||||| ||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||||| |
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| T |
7839925 |
aacatcggcgacgaaatcagactttcacttctacaagcaatcgaagcttctagaatttcaatcgttgttctgtgtaaagactacgcttcttccacttggt |
7839826 |
T |
|
| Q |
114 |
gccttgatgaactagtcaagatcgttgactgttatgacaa----aaatagaaaatcagtatttgttattttttataagatagaaccttcagatgttaggt |
209 |
Q |
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||||||| ||||| || ||||||||||||||||| || | ||| ||||| | || |||||||| ||||||||| | ||| |||| |||||||| |
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| T |
7839825 |
gccttgacgaacttgttaagatcgttgactgttactacgagatgaaagggaaaa-ctgtttttgttatattttataaggtggaagcttctgatgttagac |
7839727 |
T |
|
| Q |
210 |
atcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagatttggaaaggaatcggagaaggtgaaagcatggaggttggctttgaa |
303 |
Q |
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||||||| || || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
7839726 |
atcagagaaagagctatgaaattgcaatgattcaacatgaaaagagatttggaaaggaatcggagaaggtgaagaaatggaggtctgctttgaa |
7839633 |
T |
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