View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15831_low_27 (Length: 324)
Name: NF15831_low_27
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 46403487 - 46403279
Alignment:
| Q |
1 |
cggggatattcatcatctgtagaccgatatagt---tatagtagtggtagccgtggagtttccaagcattctgagtatcgtggtatatactatgtattac |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46403487 |
cggggatattcatcatctgtagaccgatatagtagttatagtagtggtagccgtggagtttccaagcattctgagtatcgtggtatatactatgtattac |
46403388 |
T |
|
| Q |
98 |
tttttaaaacaagattcgtagttttagtttt------ttgtagttcaggccagctannnnnnnncttctatttcccatttgtaataaagtataatgtttt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46403387 |
tttttaaaacaagattcgtagttttagttttttgtttttgtagttcaggccagctattttttttcttctatttcccatttgtaataaagtataatgtttt |
46403288 |
T |
|
| Q |
192 |
tgctgaccc |
200 |
Q |
| |
|
||||||||| |
|
|
| T |
46403287 |
tgctgaccc |
46403279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 14741276 - 14741236
Alignment:
| Q |
243 |
ataatttaagaaatggtaatactcacctaatttgttttttc |
283 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
14741276 |
ataatttaagaaatggtaacagtcacctaatttgttttttc |
14741236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University