View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_34 (Length: 289)
Name: NF15831_low_34
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 40277219 - 40277477
Alignment:
| Q |
20 |
gttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaat |
119 |
Q |
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| T |
40277219 |
gttctatgattggcttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaat |
40277318 |
T |
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| Q |
120 |
tttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatttgatgaagccgaaagagcaaga |
219 |
Q |
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| T |
40277319 |
tttatttgtcagtgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactccttgaatattagatttgatgaagccgaaagagcaaga |
40277418 |
T |
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| Q |
220 |
ctaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttgatgatgt |
278 |
Q |
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| T |
40277419 |
ctaatatcttccaccatagaaaatatggatcgtccaatacttgtgatctttgatgatgt |
40277477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 52 - 278
Target Start/End: Original strand, 40376396 - 40376631
Alignment:
| Q |
52 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaata |
151 |
Q |
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| T |
40376396 |
tctggtaaaactacattggtgagagtaatgggtgagaaagtcatgtttttaaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaata |
40376495 |
T |
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| Q |
152 |
tcacagcaatgcaagatgaaattgctgactccttgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaa |
242 |
Q |
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| T |
40376496 |
tcacagcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccacaatagaaaa |
40376595 |
T |
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| Q |
243 |
tatggatcgtccaatgcttgtgatctttgatgatgt |
278 |
Q |
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| T |
40376596 |
tatggatcatcctatacttgtgatctttgatgatgt |
40376631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 52 - 278
Target Start/End: Original strand, 40386641 - 40386876
Alignment:
| Q |
52 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaata |
151 |
Q |
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| T |
40386641 |
tctggtaaaactacgttggtgaaagtaatggaacagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaata |
40386740 |
T |
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| Q |
152 |
tcacagcaatgcaagatgaaattgctgactccttgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaa |
242 |
Q |
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| T |
40386741 |
tcacagcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctggaagagcaagaagaatattatccacaatagaaga |
40386840 |
T |
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| Q |
243 |
tatggatcgtccaatgcttgtgatctttgatgatgt |
278 |
Q |
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| T |
40386841 |
tatggatcgtccaatacttgttatctttgatgatgt |
40386876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 278
Target Start/End: Original strand, 40333363 - 40333598
Alignment:
| Q |
52 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaata |
151 |
Q |
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| T |
40333363 |
tctggtaaaactacgttggtgaaagtaatggaacagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaata |
40333462 |
T |
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| Q |
152 |
tcacagcaatgcaagatgaaattgctgactccttgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaa |
242 |
Q |
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| T |
40333463 |
tcacagcaatgcaagatgaaattgctgacttcttgaatataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccacaatagaaga |
40333562 |
T |
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| Q |
243 |
tatggatcgtccaatgcttgtgatctttgatgatgt |
278 |
Q |
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| T |
40333563 |
tatggatcgtccaatacttgtgatctttgatgatgt |
40333598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 40598367 - 40598208
Alignment:
| Q |
22 |
tctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattt |
121 |
Q |
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| T |
40598367 |
tctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaaagttaagcatctaaagatttttcatgaggttt |
40598268 |
T |
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| Q |
122 |
tatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgact |
181 |
Q |
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| T |
40598267 |
tatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgact |
40598208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 40257690 - 40257607
Alignment:
| Q |
28 |
attgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatattttt |
111 |
Q |
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| T |
40257690 |
attggattatatgggaagaagggctctggtaaaacaaagttggtgaaagcagttggtgagaaagccaagtatttaaagattttt |
40257607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 40325801 - 40325898
Alignment:
| Q |
52 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaa |
149 |
Q |
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| T |
40325801 |
tctggtaaaacaacattagtgaaagcagtggctgagaaagccaagtactccaagttttttgatgaagttttatttatcaatgtgtcccaaaacccaaa |
40325898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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