View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_40 (Length: 283)
Name: NF15831_low_40
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 40277737 - 40277458
Alignment:
| Q |
2 |
ttctaggtaacccttcacatttggaagcaacttcgcgtgcgagattcaataagtcaaacgagcataagtactcatcatgaatactacctgannnnnnnn- |
100 |
Q |
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| T |
40277737 |
ttctaggtaacccttcacatttggaagcaacttcacgtgcgagattcaataagtcaatcgagcataagtactcatcatgaatactacctgattttttttt |
40277638 |
T |
|
| Q |
101 |
gaacaaagtccaagtttcctctgtagataagggatcaagttgaatcttcctttgacagtacatcaagtcacagtcttgttggtaaaatgtgatcaaaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40277637 |
gaacaaagtccaagtttcctctgtagataagggattaagttgaatcttcctttgacagtacatcaagtcacagtcttgttggaaaaatgtgatcaaaagg |
40277538 |
T |
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| Q |
201 |
accttgcatcgattacttttcagtggaatacctacatcctctgggttgaatttttctcgaacatcatcaaagatcacaag |
280 |
Q |
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| T |
40277537 |
accttgcatcgattacttttcagtggaatgcctacatcctctgggttgaatttttcccgaacatcatcaaagatcacaag |
40277458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 277
Target Start/End: Original strand, 40597942 - 40598118
Alignment:
| Q |
101 |
gaacaaagtccaagtttcctctgtagataagggatcaagttgaatcttcctttgacagtacatcaagtcacagtcttgttggtaaaatgtgatcaaaagg |
200 |
Q |
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| T |
40597942 |
gaacaaagtccaagattcctctatagataagggaccaagttgaatattccttttggagtgcatcaattcacaatcttgttgggcaagtgcggtcaaaagg |
40598041 |
T |
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| Q |
201 |
accttgcatcgattacttttcagtggaatacctacatcctctgggttgaatttttctcgaacatcatcaaagatcac |
277 |
Q |
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| T |
40598042 |
atcttgcatcgattactattacaaggaatgcctacatcttctggatcaaattttacccgaacatcatcgaaaatcac |
40598118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 280
Target Start/End: Complemental strand, 40387035 - 40386857
Alignment:
| Q |
102 |
aacaaagtccaagtttcctctgtagataagggatcaagttgaatcttcctttgacagtacatcaagtcacagtcttgttggtaaaatgtgatcaaaagga |
201 |
Q |
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||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| | || |||| | || | ||||||| | |
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| T |
40387035 |
aacaacgtcgaagcttcctctgtagataagggatcaagtagaatcttcctttgacagtaaactaagtcacaatatttttggcgacgtgcggtcaaaagta |
40386936 |
T |
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| Q |
202 |
ccttgcatcgattacttttcagtggaatacctacatcctctgggttgaatttttctcgaacatcatcaaagatcacaag |
280 |
Q |
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| T |
40386935 |
ccttgcatcgattactattagaaggaattcctacatcccgtaggtcaaattttgcccgaacatcatcaaagataacaag |
40386857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 40326196 - 40326080
Alignment:
| Q |
101 |
gaacaaagtccaagtttcctctgtagataagggatcaagttgaatcttcctttgacagtacatcaagtcacagtcttgttggtaaaatgtgatcaaaagg |
200 |
Q |
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|||||||||||||| ||||||||| ||||| ||| ||||||||||| ||||||||| | || || ||||| ||||||||| | ||||| |||||||| |
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| T |
40326196 |
gaacaaagtccaagcttcctctgtggataaaggactaagttgaatctccctttgacaatgtataaactcacaatcttgttggcgacatgtggtcaaaagg |
40326097 |
T |
|
| Q |
201 |
accttgcatcgattact |
217 |
Q |
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||||||||||||||||| |
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| T |
40326096 |
accttgcatcgattact |
40326080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 280
Target Start/End: Complemental strand, 40333757 - 40333579
Alignment:
| Q |
102 |
aacaaagtccaagtttcctctgtagataagggatcaagttgaatcttcctttgacagtacatcaagtcacagtcttgttggtaaaatgtgatcaaaagga |
201 |
Q |
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||||||||| ||| ||||||||||||||| ||||||||| |||||| ||||||||||| ||| ||||| || | || |||| | || | ||||||| | |
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| T |
40333757 |
aacaaagtcgaagcttcctctgtagataatggatcaagtagaatctccctttgacagtgcattaagtcgcaatatttttggcgacgtgcggtcaaaagaa |
40333658 |
T |
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| Q |
202 |
ccttgcatcgattacttttcagtggaatacctacatcctctgggttgaatttttctcgaacatcatcaaagatcacaag |
280 |
Q |
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|||||||| ||||||| || ||||| ||||||||| | ||| |||||| | ||||||||||||||||||||||| |
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| T |
40333657 |
ccttgcatagattactattacaaggaattcctacatcccgtaggtcaaattttgcccgaacatcatcaaagatcacaag |
40333579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 280
Target Start/End: Complemental strand, 40376790 - 40376612
Alignment:
| Q |
102 |
aacaaagtccaagtttcctctgtagataagggatcaagttgaatcttcctttgacagtacatcaagtcacagtcttgttggtaaaatgtgatcaaaagga |
201 |
Q |
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||||||||| ||| ||||||||||||||| | ||||||| ||||| ||||||||| | ||| |||||||| | || |||| | || | ||||||| | |
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| T |
40376790 |
aacaaagtcgaagcttcctctgtagataatgaatcaagtaaaatctccctttgacaatgcattaagtcacaatatttttggctacgtgcggtcaaaagaa |
40376691 |
T |
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| Q |
202 |
ccttgcatcgattacttttcagtggaatacctacatcctctgggttgaatttttctcgaacatcatcaaagatcacaag |
280 |
Q |
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|||||||| ||||||| | ||||| ||||||||| | ||| ||| || | ||||||||||||||||||||||| |
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| T |
40376690 |
ccttgcatagattactagtacaaggaattcctacatcccgtaggtcaaatcttgcccgaacatcatcaaagatcacaag |
40376612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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