View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15831_low_42 (Length: 281)

Name: NF15831_low_42
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15831_low_42
NF15831_low_42
[»] chr3 (1 HSPs)
chr3 (19-263)||(14553496-14553742)
[»] chr5 (14 HSPs)
chr5 (22-263)||(37533486-37533729)
chr5 (22-263)||(37824281-37824524)
chr5 (23-263)||(37594710-37594952)
chr5 (23-263)||(37400344-37400586)
chr5 (23-263)||(37703054-37703296)
chr5 (23-263)||(37697173-37697415)
chr5 (23-263)||(37640258-37640500)
chr5 (22-263)||(37712010-37712253)
chr5 (32-263)||(37436093-37436326)
chr5 (83-257)||(37392484-37392660)
chr5 (195-252)||(37412962-37413019)
chr5 (217-262)||(37429119-37429164)
chr5 (72-122)||(37429261-37429311)
chr5 (209-258)||(37343272-37343321)
[»] chr4 (2 HSPs)
chr4 (23-263)||(16842408-16842650)
chr4 (209-263)||(24217460-24217514)
[»] chr8 (1 HSPs)
chr8 (207-249)||(23496081-23496123)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 14553742 - 14553496
Alignment:
Q  19 cagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14553742 cagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagct 14553643  T
Q  119 ttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  14553642 ttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagctatgtggatttaagttataacatg 14553543  T
Q  217 ttaaatggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14553542 ttaaatggaacaattccacattggtgttattctttgccttcgttgtt 14553496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 37533729 - 37533486
Alignment:
Q  22 atgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttc 121  Q
    |||||| |||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  37533729 atgtttatggaaatttaatcaaattggaatatttatcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttc 37533630  T
Q  122 ttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgtta 219  Q
    | ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||| |||||||||||    
T  37533629 tattttaggtttatcatataacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagtgataacatgtta 37533530  T
Q  220 aatggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37533529 aatggaacaattccacattggtgttattctttgccttcgttgtt 37533486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 37824524 - 37824281
Alignment:
Q  22 atgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttc 121  Q
    |||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  37824524 atgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttc 37824425  T
Q  122 ttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagttataacatgtta 219  Q
    || ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||||||||| | ||||||||||    
T  37824424 ttatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagtattgtggatttaagctttaacatgtta 37824325  T
Q  220 aatggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37824324 aatggaacaattccacattggtgttattctttgccttcgttgtt 37824281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 37594952 - 37594710
Alignment:
Q  23 tgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttct 122  Q
    ||||| ||||||||||||||||||||||||||||   |||| || |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  37594952 tgtttatggaaatttaatcaaattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttct 37594853  T
Q  123 tttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgttaa 220  Q
     ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||  ||||||||||||    
T  37594852 attttaggtttatcatataacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagggataacatgttaa 37594753  T
Q  221 atggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37594752 atggaacaattccacattggtgttattctttgccttcgttgtt 37594710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 37400344 - 37400586
Alignment:
Q  23 tgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttct 122  Q
    ||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  37400344 tgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttct 37400443  T
Q  123 tttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagct--gtggatttaagttataacatgttaa 220  Q
      ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||  |||  |||  || ||||||||||||    
T  37400444 catttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttgggtgataacatgttaa 37400543  T
Q  221 atggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37400544 atggaacaattccacattggtgttattctttgccttcgttgtt 37400586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 37703296 - 37703054
Alignment:
Q  23 tgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttct 122  Q
    ||||| ||||||||||| |||||||||||||||||  |||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||| |    
T  37703296 tgtttatggaaatttaaacaaattggaatatttatcactttcctctaacaagctaacaggccaagttccatcatcactttttcatctacctcaccttttt 37703197  T
Q  123 tttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgttaa 220  Q
     ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||  ||||||||||||    
T  37703196 attttaggtttatcatttaacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagggataacatgttaa 37703097  T
Q  221 atggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37703096 atggaacaattccacattggtgttattctttgccttcgttgtt 37703054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 37697415 - 37697173
Alignment:
Q  23 tgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttct 122  Q
    ||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||||    
T  37697415 tgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctaccccacctttct 37697316  T
Q  123 tttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagttataacatgttaa 220  Q
      |||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||   ||||  |||   | ||||||||||||    
T  37697315 catttaggtttatcatttaacaaactagttgggccaattccaattgaaatcacaaaacgttccaaattgagttatgtgtttttggatgataacatgttaa 37697216  T
Q  221 atggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37697215 atggaacaattccacattggtgttattctttgccttcgttgtt 37697173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 37640500 - 37640258
Alignment:
Q  23 tgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttct 122  Q
    ||||| |||||||||||||||||||||||||||||  |||| || |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  37640500 tgtttatggaaatttaatcaaattggaatatttatcactttactttaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttct 37640401  T
Q  123 tttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagttataacatgttaa 220  Q
      ||||| |||| ||| ||||||||||||||| || ||| ||||||||||| |||||||||| ||||||||   ||||| |||   | ||||||||||||    
T  37640400 catttatatttagcatataacaaactagttggcccaattccaattgaaatcgcaaaacgttccaaattgagatatgtgggtttggatgataacatgttaa 37640301  T
Q  221 atggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37640300 atggaacaattccacattggtgttattctttgccttcgttgtt 37640258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 37712253 - 37712010
Alignment:
Q  22 atgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttc 121  Q
    |||||| ||||||||||||||||||| ||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  37712253 atgtttatggaaatttaatcaaattgaaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttc 37712154  T
Q  122 ttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgtta 219  Q
    |  ||||| |||| ||  ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||  ||||  |||   | |||||||||||    
T  37712153 tcatttatatttagcagataacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttggatgataacatgtta 37712054  T
Q  220 aatggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  37712053 aatggaacaattccacagtggtgttattctttgccttcattgtt 37712010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 32 - 263
Target Start/End: Complemental strand, 37436326 - 37436093
Alignment:
Q  32 aaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttcttttttatgt 131  Q
    |||||||| |||||||||||||||||  |||| ||| |||| |||| |||||||||||||||||||||||||| ||||||| || ||||||  ||||  |    
T  37436326 aaatttaaccaaattggaatatttatcactttcctccaacagcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagat 37436227  T
Q  132 ttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgttaaatggaacaa 229  Q
    ||||||| ||||||||||||||| || ||| |||||||||| |||||||||| ||||||||||  ||||| | ||   ||||||||||||||||||||||    
T  37436226 ttatcatttaacaaactagttggcccaattccaattgaaattacaaaacgtttaaaattgagctatgtgggtctagaatataacatgttaaatggaacaa 37436127  T
Q  230 ttccacattggtgttattctttgccttcgttgtt 263  Q
    ||||||| |||||||||| ||||||||| |||||    
T  37436126 ttccacagtggtgttattatttgccttcattgtt 37436093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 37392484 - 37392660
Alignment:
Q  83 ccaagttccatcatcactttttaatctacctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgt 182  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||  |||||||||||||||||||||||| || ||| || || |||||||||||||     
T  37392484 ccaagttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcacaaaacgc 37392583  T
Q  183 tcaaaattgagc--tgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttgccttc 257  Q
    ||||||||||||  |||| ||||| ||| ||||||||| ||||| |||||||| || ||||||||||||||||||||    
T  37392584 tcaaaattgagcattgtgaatttaggttctaacatgtttaatggtacaattccgcagtggtgttattctttgccttc 37392660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 37412962 - 37413019
Alignment:
Q  195 tgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttg 252  Q
    ||||||||||| | |||| |||||||||||||||| ||| ||||||||||||| ||||    
T  37412962 tgtggatttaaataataaaatgttaaatggaacaaatcctcattggtgttattatttg 37413019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 37429164 - 37429119
Alignment:
Q  217 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 262  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37429164 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 37429119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 37429311 - 37429261
Alignment:
Q  72 aacctagcaggccaagttccatcatcactttttaatctacctcagctttct 122  Q
    |||||| |||||||||||||||||||| | ||| ||||| |||||||||||    
T  37429311 aacctaacaggccaagttccatcatcattgtttcatctaactcagctttct 37429261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 37343321 - 37343272
Alignment:
Q  209 ataacatgttaaatggaacaattccacattggtgttattctttgccttcg 258  Q
    |||||||||||||||||| ||||| | ||||||||| | |||||||||||    
T  37343321 ataacatgttaaatggaaaaattctaaattggtgttttactttgccttcg 37343272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 16842408 - 16842650
Alignment:
Q  23 tgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttct 122  Q
    ||||| ||||||||||| |||||| |||||| |||  |||| ||||||||  ||| |||||||||||||||||||||||||| |||||||| | ||||||    
T  16842408 tgtttatggaaatttaagcaaattagaatatctatcactttcctctaacagtctaacaggccaagttccatcatcactttttcatctaccttatctttct 16842507  T
Q  123 tttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgttaa 220  Q
      ||||| |||||||| ||||||||| ||||| || ||| |||||||||||||||||  |||||||||||||  ||||| ||| ||| | ||||||||||    
T  16842508 aatttatatttatcatttaacaaactggttggcccaattccaattgaaatcacaaaaacttcaaaattgagctatgtgggtttgagtgagaacatgttaa 16842607  T
Q  221 atggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  16842608 atggaacaattccaaattggtgttattctttgccttcgttgtt 16842650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 24217460 - 24217514
Alignment:
Q  209 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgtt 263  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  24217460 ataacatgttaaatggaacaattccgcaatggtgttattccttgccttcgttgtt 24217514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 23496123 - 23496081
Alignment:
Q  207 ttataacatgttaaatggaacaattccacattggtgttattct 249  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  23496123 ttataacatgttaaatggaacaattccacgttggtgtttttct 23496081  T

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