View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_43 (Length: 267)
Name: NF15831_low_43
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 1527477 - 1527682
Alignment:
| Q |
9 |
tcaatagagttcttgaagttttcaatcatttcaagagatacttgacattccctaccaagagaagtctttaaagaaattgatgctaattgagtacataaaa |
108 |
Q |
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| T |
1527477 |
tcaatagagttcttgaagttttcaatcatttcaagagatacttgacattccctaccaagagaagtctttaaagaaattgatgctaattgagtacataaaa |
1527576 |
T |
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| Q |
109 |
ggaaataactcatgaaatcaaggaaaaccattggcatgttcctcctatccctcaaatcatatatggtaaaaggactttgatagggtagatttttctcttt |
208 |
Q |
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| T |
1527577 |
ggaaataactcatgaaatcaaggaaaaccattggcatgttcctcctatccctcaaatcatatatggtaaaaggactttgatagggtagatttttctcttt |
1527676 |
T |
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| Q |
209 |
aaagac |
214 |
Q |
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|||||| |
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| T |
1527677 |
aaagac |
1527682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 3017341 - 3017412
Alignment:
| Q |
106 |
aaaggaaataactcatgaaatcaaggaaaaccattggcatgttcctcctatccctcaaatcatatatggtaaaag |
180 |
Q |
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| T |
3017341 |
aaaggaagtaactcagtcaatcaaggaaaatcattggcatgt---tcctatccctccaatcatacatggtaaaag |
3017412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 3017222 - 3017262
Alignment:
| Q |
16 |
agttcttgaagttttcaatcatttcaagagatacttgacat |
56 |
Q |
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| T |
3017222 |
agttctagaagctttcaatcatttaaagagatacttgacat |
3017262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 18361049 - 18361089
Alignment:
| Q |
16 |
agttcttgaagttttcaatcatttcaagagatacttgacat |
56 |
Q |
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| T |
18361049 |
agttctagaagctttcaatcatttgaagagatacttgacat |
18361089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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