View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15831_low_49 (Length: 251)

Name: NF15831_low_49
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15831_low_49
NF15831_low_49
[»] chr4 (8 HSPs)
chr4 (3-233)||(8979232-8979462)
chr4 (13-231)||(9000158-9000376)
chr4 (5-232)||(8966240-8966467)
chr4 (3-231)||(8929387-8929615)
chr4 (13-231)||(9030748-9030966)
chr4 (13-228)||(8900570-8900785)
chr4 (5-225)||(8914467-8914687)
chr4 (5-213)||(8954916-8955124)
[»] chr5 (2 HSPs)
chr5 (12-228)||(20074028-20074244)
chr5 (5-228)||(9400259-9400482)
[»] chr7 (1 HSPs)
chr7 (197-233)||(3619978-3620014)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 8979462 - 8979232
Alignment:
Q  3 catgtccaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtt 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  8979462 catgtccaataaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaagtattaggatctctttgaatagcccagacgtt 8979363  T
Q  103 tacatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatctt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  8979362 tacatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcagtggagctggtaggtacaatctt 8979263  T
Q  203 aatgtctcttttatcactgccttcaaatata 233  Q
    |||||||||||||||||||||||||||||||    
T  8979262 aatgtctcttttatcactgccttcaaatata 8979232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 9000158 - 9000376
Alignment:
Q  13 aaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaat 112  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||   |||||| ||||| ||||||||||| || || |||||||||    
T  9000158 aaaatttatagaactttctaagaatctttcaggataaaattcttctggatttttccaaacattagggtctctctgaatagcccaagcattcacatacaat 9000257  T
Q  113 attgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctctt 212  Q
    ||||| | ||||||||||||||| ||| | ||| ||||  |||| | |||||||||| | | ||| |  ||||||||||||| ||||||||  |||||||    
T  9000258 attgtcttggctggaatattgtatccacttatagtgcaattttcacgtgattctctttgcataagtagaggggctggtaggtgcaatcttagcgtctctt 9000357  T
Q  213 ttatcactgccttcaaata 231  Q
    | |||||||||||||||||    
T  9000358 taatcactgccttcaaata 9000376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 8966240 - 8966467
Alignment:
Q  5 tgtccaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgttta 104  Q
    ||||||||||||||  | |||| ||| | |||||||||||||||||| |||||||||||||||||  || | || ||||||||||||||||| || || |    
T  8966240 tgtccaagaaaattcgtcgaacattccaagaatctctcgggataaaactcttctggatttttccaattacttgggtctctttgaatagcccaagcattca 8966339  T
Q  105 catacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaa 204  Q
    |||||| |||||| | ||||||||| ||||| ||| | ||||||||  |||| |||||||||||||| ||||| | |||||  ||||||| |||||| ||    
T  8966340 catacactattgtgttggctggaatcttgtaaccacttataatgcacttttctcttgattctcttggaacaagtagtggggtaggtaggtgcaatctcaa 8966439  T
Q  205 tgtctcttttatcactgccttcaaatat 232  Q
     |||||||||||||||||||| ||||||    
T  8966440 cgtctcttttatcactgcctttaaatat 8966467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 8929387 - 8929615
Alignment:
Q  3 catgtccaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtt 102  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||| |||| ||||||  | | ||  ||||| ||||||| ||| || ||    
T  8929387 catgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatgaatagaccaagcatt 8929486  T
Q  103 tacatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatctt 202  Q
     ||||| | ||||||||  || ||||||| |||||||   | ||||||  ||||||||| ||||||||| | ||||||||| |||||||||||||||||     
T  8929487 cacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcccttgtttctcttggcaaaagcaatggagctggtaggtacaatctc 8929586  T
Q  203 aatgtctcttttatcactgccttcaaata 231  Q
    ||||||||||||||||| |||||||||||    
T  8929587 aatgtctcttttatcaccgccttcaaata 8929615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 9030966 - 9030748
Alignment:
Q  13 aaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaat 112  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||  |||| |||   |||| | ||||| ||||||||||| || || |||||||||    
T  9030966 aaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaat 9030867  T
Q  113 attgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctctt 212  Q
    |||||   ||||||||||||||| ||||| ||| ||||  |||| | ||||||||| |  |  ||||||||||||||||| | ||||||||| |||||||    
T  9030866 attgtcctggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctggtagatgcaatcttaacgtctctt 9030767  T
Q  213 ttatcactgccttcaaata 231  Q
    | |||||||| ||||||||    
T  9030766 taatcactgcattcaaata 9030748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 8900570 - 8900785
Alignment:
Q  13 aaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaat 112  Q
    ||||||||||||||||||||  ||||| || |||||||| |||||||| ||||||||   ||  || ||| | ||||||||||| || || ||| |||      
T  8900570 aaaatttatagaactttctaaaaatctttcaggataaaactcttctgggtttttccaaacatctgggtctgtatgaatagcccaagcattcacaaacaca 8900669  T
Q  113 attgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctctt 212  Q
    || |  |  || ||||| | ||||||| | ||||||||  ||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  8900670 atcgcctttgcaggaatttggtagccacttataatgcacttttcccttgtttctcttggcacaagcaatgggcctggtaggtacaatctcaatgtctctt 8900769  T
Q  213 ttatcactgccttcaa 228  Q
    ||||||||||||||||    
T  8900770 ttatcactgccttcaa 8900785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 8914467 - 8914687
Alignment:
Q  5 tgtccaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgttta 104  Q
    |||||| ||||||||| |||||||||||  |||||||| ||||||||||||||||| ||||||||   ||| |  ||| | ||||||||||| || || |    
T  8914467 tgtccatgaaaatttaaagaactttctaaaaatctctctggataaaattcttctgggtttttccaaacatttgagtctgtatgaatagcccaagcattca 8914566  T
Q  105 catacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaa 204  Q
    || ||| ||| |  |  || ||||| | | ||||||| ||| ||||| ||||  ||| |||||||||  |||||||||||||||| ||||||||||| ||    
T  8914567 caaacactatcgcctttgcgggaatttggaagccatttatagtgcatttttcagttgtttctcttggcgcaagcaatggggctggcaggtacaatctcaa 8914666  T
Q  205 tgtctcttttatcactgcctt 225  Q
    |||||||||||||||||||||    
T  8914667 tgtctcttttatcactgcctt 8914687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 8955124 - 8954916
Alignment:
Q  5 tgtccaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgttta 104  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||  |||  |||||||| ||||||||||| || ||||    
T  8955124 tgtccaataaaatttatagaactttctaagaatctctcaggataaaattcttctgggtttatccaaatatctggatctctctgaatagcccaagcattta 8955025  T
Q  105 catacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaa 204  Q
    |||| |||||||| |  || ||||| ||||| ||| | ||  | ||  ||||  | ||||| ||||| ||||| | ||||||||||||||  |||||||     
T  8955024 catataatattgtctttgcaggaatgttgtatccacttatggtacaattttcaatagattcccttggcacaagtagtggggctggtaggtgtaatcttag 8954925  T
Q  205 tgtctcttt 213  Q
    |||||||||    
T  8954924 tgtctcttt 8954916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 20074028 - 20074244
Alignment:
Q  12 gaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaa 111  Q
    |||||||||| ||||||||||  |||||||| ||||||||||||||||||||||||||   |||||| ||| | ||||||||||| || || ||| |||     
T  20074028 gaaaatttatcgaactttctaaaaatctctcaggataaaattcttctggatttttccaaacattagggtctgtatgaatagcccaagcattcacaaacac 20074127  T
Q  112 tattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctct 211  Q
    ||  |  |  || ||||| | |||||||   ||| ||||  ||||||||| ||||||||| ||||||||||||||||| | ||||||||| | |||||||    
T  20074128 taccgcctttgccggaatttggtagccacctatagtgcacttttcccttgtttctcttggcacaagcaatggggctggcaagtacaatctcagtgtctct 20074227  T
Q  212 tttatcactgccttcaa 228  Q
    |||||||||||||||||    
T  20074228 tttatcactgccttcaa 20074244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 9400259 - 9400482
Alignment:
Q  5 tgtccaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgttta 104  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||   |||||  ||||| ||||||||||| || || |    
T  9400259 tgtccaagaaaatttatagaactttctaagaatctctctggataaaactcttctggatctttccaaacattagagtctctatgaatagcccaagcattca 9400358  T
Q  105 catacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaa 204  Q
    |||||| |||||| |  |||||||| | ||| |||   ||| ||||  ||||| |||| || ||||| |  ||||||||   ||||||| | ||||| ||    
T  9400359 catacactattgtctttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtaggaataatctcaa 9400458  T
Q  205 tgtctcttttatcactgccttcaa 228  Q
    |||||||||||| |||||||||||    
T  9400459 tgtctcttttatgactgccttcaa 9400482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 3619978 - 3620014
Alignment:
Q  197 aatcttaatgtctcttttatcactgccttcaaatata 233  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  3619978 aatcttaatgtctcttttatcacagccttaaaatata 3620014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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