View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15831_low_5 (Length: 540)

Name: NF15831_low_5
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15831_low_5
NF15831_low_5
[»] chr7 (17 HSPs)
chr7 (18-530)||(32726596-32727107)
chr7 (22-83)||(35981485-35981546)
chr7 (22-83)||(36002897-36002958)
chr7 (18-86)||(35938799-35938867)
chr7 (250-525)||(35957023-35957298)
chr7 (18-189)||(36222133-36222304)
chr7 (22-87)||(35957460-35957525)
chr7 (250-530)||(35981029-35981309)
chr7 (250-530)||(36002441-36002721)
chr7 (250-505)||(36218373-36218628)
chr7 (18-87)||(35976915-35976984)
chr7 (18-87)||(35998327-35998396)
chr7 (251-434)||(36223582-36223765)
chr7 (258-328)||(35946013-35946083)
chr7 (18-92)||(36218142-36218216)
chr7 (251-340)||(35976663-35976752)
chr7 (251-340)||(35998075-35998164)
[»] chr2 (2 HSPs)
chr2 (18-87)||(26329175-26329244)
chr2 (399-530)||(26329555-26329686)
[»] chr1 (3 HSPs)
chr1 (19-326)||(18124942-18125248)
chr1 (194-311)||(18117304-18117421)
chr1 (18-94)||(18117520-18117596)
[»] chr8 (1 HSPs)
chr8 (250-312)||(35406768-35406834)


Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 32727107 - 32726596
Alignment:
Q  18 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttctctattgataatatttgtagtctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32727107 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttctctagtgataatatttgtagtctt 32727008  T
Q  118 tggatggctcttggaattgtacaatctcggattggaattgaacaactcaaggatattgcaagagaatatatttgaggagttaaactctagattgtttctt 217  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32727007 tggatggcttttggaattgtacaatctcggattggaattgaacaactcaaggatattgcaagagaatatatt-gaggagttaaactctagattgtttctt 32726909  T
Q  218 caagatttcgaacactttggctactgttttatgttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726908 caagatttcgaacactttggctactgttttatgttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtag 32726809  T
Q  318 attcacatactaggaatatacctgaacatacaagacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgag 417  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726808 attcacatactaggaatatacctgaacatacaagacacgtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgag 32726709  T
Q  418 aactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaaga 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32726708 aactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgcgatatttaggtttaaga 32726609  T
Q  518 gattcttcctttg 530  Q
    |||||||||||||    
T  32726608 gattcttcctttg 32726596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 35981546 - 35981485
Alignment:
Q  22 tatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaaga 83  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  35981546 tatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 35981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 36002958 - 36002897
Alignment:
Q  22 tatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaaga 83  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  36002958 tatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 36002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 35938867 - 35938799
Alignment:
Q  18 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagatta 86  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  |||||||| ||||||||||||||    
T  35938867 aagctatgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 35938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 525
Target Start/End: Complemental strand, 35957298 - 35957023
Alignment:
Q  250 gttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacataca 349  Q
    ||||||||||||||||||||||||||||||| || | |||||| | | |||||| |||||||||||||| || |||||| | ||||||||| | ||   |    
T  35957298 gttcaaagtacatgatttgatacatgatcttgctttgtatgtttctagagaggactttgtagcggtagactcgcatactcgtaatatacctcagcaagta 35957199  T
Q  350 agacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcc 449  Q
    || ||  || |||||||  || || ||||||| ||| ||| ||| ||||| ||||| | |||| |||||| |||  ||||||||||    ||||| || |    
T  35957198 aggcatttatcagttgttaaagatgattcacttgaccttgatttgttccctaagtctagaagtgtgagaagtatactatttcccatctttggagtaggtc 35957099  T
Q  450 ttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttc 525  Q
    |||| ||| ||| | | ||||| | || ||| || || |||||||| ||| | ||||| |||||||| ||||||||    
T  35957098 ttgaaagtgaaagtcttctgaataaattgatgtcgaggtacaaatatttgcgttatttgggtttaagtgattcttc 35957023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 36222133 - 36222304
Alignment:
Q  18 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttctctattgataatatttgtagtctt 117  Q
    |||||||||| |||||||||||||||||||||| ||||||||||  |||||| | ||||||||||||||| | || ||||||| | | |||  | ||||     
T  36222133 aagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattattcattttctattgttgaaattacttgtctg 36222232  T
Q  118 tggatggctcttggaattgtacaatctcggattggaattgaacaactcaaggatattgcaagagaatatatt 189  Q
    ||||| ||||||||| | || |||||   || ||||| |||| | ||  || ||||||||| ||||||||||    
T  36222233 tggatagctcttggattggttcaatccttgaatggaagtgaaaagctagagaatattgcaatagaatatatt 36222304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 35957525 - 35957460
Alignment:
Q  22 tatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 87  Q
    ||||||||||||||||| ||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  35957525 tatgatcaaatgccatcatatctgagacaatgttttgcttatttttccctttatcccaaagattat 35957460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 530
Target Start/End: Complemental strand, 35981309 - 35981029
Alignment:
Q  250 gttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacataca 349  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  |||||||| ||||| ||  ||||||  |||||    || ||| || | ||   |    
T  35981309 gttcaaagtacatgatttgatacatgatcttgcactttatgttggaaaagaggaatttgtggcattagatttgcatacacacaacatatctaagcaagta 35981210  T
Q  350 agacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcc 449  Q
    |||||  |  ||||||| ||||||||| |||  | |  || | | |||||||||||   |||  | |||||| | ||||||||||| |||||| |||| |    
T  35981209 agacatatttcagttgttgaaaataatccacaaggccatgttctgttccccaagtcacgaagcgtaagaactttattatttcccatcaaaggactgggtc 35981110  T
Q  450 ttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttcctttg 530  Q
    ||| |||| ||||| ||||  | | ||||||||||||||||||||||||  ||||||||| ||||||  ||||||| ||||    
T  35981109 ttgctagtgaaactctgctagatatatggatatcaagatacaaatacttaagatatttagatttaagtaattcttcatttg 35981029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 530
Target Start/End: Complemental strand, 36002721 - 36002441
Alignment:
Q  250 gttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacataca 349  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  |||||||| ||||| ||  ||||||  |||||    || ||| || | ||   |    
T  36002721 gttcaaagtacatgatttgatacatgatcttgcactttatgttggaaaagaggaatttgtggcattagatttgcatacacacaacatatctaagcaagta 36002622  T
Q  350 agacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcc 449  Q
    |||||  |  ||||||| ||||||||| |||  | |  || | | |||||||||||   |||  | |||||| | ||||||||||| |||||| |||| |    
T  36002621 agacatatttcagttgttgaaaataatccacaaggccatgttctgttccccaagtcacgaagcgtaagaactttattatttcccatcaaaggactgggtc 36002522  T
Q  450 ttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatatttaggtttaagagattcttcctttg 530  Q
    ||| |||| ||||| ||||  | | ||||||||||||||||||||||||  ||||||||| ||||||  ||||||| ||||    
T  36002521 ttgctagtgaaactctgctagatatatggatatcaagatacaaatacttaagatatttagatttaagtaattcttcatttg 36002441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 505
Target Start/End: Original strand, 36218373 - 36218628
Alignment:
Q  250 gttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacataca 349  Q
    ||||| ||| ||||||||||||||||||||| |  | |||||||| |||||||||||||||  |||||  || | |||  | |||||| |||||||  ||    
T  36218373 gttcagagtgcatgatttgatacatgatcttgcaatgtatgttgcaaaagaggagtttgtaatggtagtatctcgtacacgaaatatatctgaacaagca 36218472  T
Q  350 agacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggcc 449  Q
    |  ||  || || |||| |||||  |||| || ||||  | ||| || ||||||||||||||| | |||||||||||||||||  |  ||||||||||||    
T  36218473 aagcatttatcaattgttgaaaaggattctcttgacaaagttttgtttcccaagtccaaaagtgtaagaactattttatttcctgtcgaaggagtgggcc 36218572  T
Q  450 ttgatagtcaaactttgctgaacacatggatatcaagatacaaatacttgtgatat 505  Q
    |||| | | |||| ||| || | || ||| |||||| ||| ||||||||| |||||    
T  36218573 ttgacaatgaaacattggtgcatacgtgggtatcaaaatataaatacttgcgatat 36218628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 35976984 - 35976915
Alignment:
Q  18 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 87  Q
    ||||||||||||||||||||| ||| |||| |||||||||| ||   |||||||||||||||||||||||    
T  35976984 aagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaagattat 35976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 35998396 - 35998327
Alignment:
Q  18 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 87  Q
    ||||||||||||||||||||| ||| |||| |||||||||| ||   |||||||||||||||||||||||    
T  35998396 aagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaagattat 35998327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 434
Target Start/End: Original strand, 36223582 - 36223765
Alignment:
Q  251 ttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacctgaacatacaa 350  Q
    |||||||| |||||||||||||| |||||| |  | ||||||||||| ||||||||||||  |||||  |||||||||  ||  ||||| |||||  |||    
T  36223582 ttcaaagtgcatgatttgatacacgatcttgcattgtatgttgcgaaggaggagtttgtaatggtagtctcacatactcagatcataccggaacaagcaa 36223681  T
Q  351 gacaagtaacagttgtcgaaaataattcactggacattggttttttccccaagtccaaaagtttgagaactattttatttccca 434  Q
    | ||  || || |||| ||||||  |||||| | |  || ||| |||||||||||||||||| | ||||| ||| |||||||||    
T  36223682 ggcatatatcaattgttgaaaatggttcacttggccatgatttgttccccaagtccaaaagtgtaagaacaattatatttccca 36223765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 35946083 - 35946013
Alignment:
Q  258 tacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatact 328  Q
    ||||||||||||||||||||||| |||| |||||||| | |||||| |||||| ||||||  |||||||||    
T  35946083 tacatgatttgatacatgatcttgctctgtatgttgcaagagaggactttgtaacggtaggctcacatact 35946013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 36218142 - 36218216
Alignment:
Q  18 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgcctt 92  Q
    ||||||||||||||||||||| ||| |||| |||||||||||||  |||||| | ||||||||||| ||| ||||    
T  36218142 aagctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttccttgtatcccaaagactatacctt 36218216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 35976752 - 35976663
Alignment:
Q  251 ttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacct 340  Q
    ||||| |||||||||||||||||||||||| |  | |||||| | | ||| || |||||||||||| | || |||||| |||||||||||    
T  35976752 ttcaatgtacatgatttgatacatgatcttgcattgtatgtttcaagagaagactttgtagcggtaaactcgcatactcggaatatacct 35976663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 35998164 - 35998075
Alignment:
Q  251 ttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtagattcacatactaggaatatacct 340  Q
    ||||| |||||||||||||||||||||||| |  | |||||| | | ||| || |||||||||||| | || |||||| |||||||||||    
T  35998164 ttcaatgtacatgatttgatacatgatcttgcattgtatgtttcaagagaagactttgtagcggtaaactcgcatactcggaatatacct 35998075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 26329175 - 26329244
Alignment:
Q  18 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 87  Q
    |||||||||||||||||||||||||||||| || ||||||||||  |||||||||| |||||||||||||    
T  26329175 aagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaagattat 26329244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 530
Target Start/End: Original strand, 26329555 - 26329686
Alignment:
Q  399 ccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaatactt 498  Q
    ||||||| |||||| ||||||||||||| | ||||||  ||||||| ||  | |||||| ||||| |  || |  |||||||||||||||||||||||||    
T  26329555 ccaagtcgaaaagtgtgagaactattttgtgtcccatccaaggagtaggtgtcgatagtgaaactctcttggattcatggatatcaagatacaaatactt 26329654  T
Q  499 gtgatatttaggtttaagagattcttcctttg 530  Q
    | | ||||||| |||||| |||||||| ||||    
T  26329655 gcgctatttagatttaagtgattcttcatttg 26329686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 18125248 - 18124942
Alignment:
Q  19 agctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttctctattgataatatttgtagtcttt 118  Q
    |||||||| ||||||||||||||||| |||||||| |||||||  || ||||||||||| ||||||  | | |||| || |    |||||  |  |||||    
T  18125248 agctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcctaaagatattactttctgtagtttggatattattgctcttt 18125149  T
Q  119 ggatggctcttggaattgtacaatctcggattggaattgaacaactcaaggatattgcaagagaatatatttgaggagttaaactctagattgtttcttc 218  Q
    || | || |||||| | || ||| | ||||  |||| |||| ||||  ||||||||||||||||||||| |||| |||||||| ||  | |  |||||||    
T  18125148 gggtagcccttggattagttcaaccccggaacggaagtgaaaaactagaggatattgcaagagaatata-ttgatgagttaaattcacgttcatttcttc 18125050  T
Q  219 aagatttcgaacactttggctactgttttatgttcaaagtacatgatttgatacatgatcttcctctttatgttgcgaaagaggagtttgtagcggtaga 318  Q
    | ||||||||| ||  |||||    || | | |||||||||||||||||| ||||||||||| |  | |||||||| |||| ||||||| ||| ||||||    
T  18125049 aggatttcgaagacaatggctggatttgtgtattcaaagtacatgatttggtacatgatctttcattgtatgttgctaaagcggagtttctagtggtaga 18124950  T
Q  319 ttcacata 326  Q
     |||||||    
T  18124949 ctcacata 18124942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 311
Target Start/End: Complemental strand, 18117421 - 18117304
Alignment:
Q  194 gagttaaactctagattgtttcttcaagatttcgaacactttggctactgttttatgttcaaagtacatgatttgatacatgatcttcctctttatgttg 293  Q
    ||||||||||| |||| |||| | || || ||| || ||||||| |||| ||  | |||||||||||| |||||| ||||||||||| || | |||||||    
T  18117421 gagttaaactcaagatcgtttttgcaggacttcaaagactttggatacttttgcaagttcaaagtacacgatttggtacatgatcttgctttctatgttg 18117322  T
Q  294 cgaaagaggagtttgtag 311  Q
    | ||| ||||||||||||    
T  18117321 caaaaaaggagtttgtag 18117304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 18117596 - 18117520
Alignment:
Q  18 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttct 94  Q
    |||||||||| |||||||||||||||| ||||| || ||||||| | || |  | |||||||||||| || ||||||    
T  18117596 aagctatgataaaatgccatcctatttaaggcactgctttgcttacattgctatgtatcccaaagatcataccttct 18117520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 35406768 - 35406834
Alignment:
Q  250 gttcaaagtacatgatttgatacatgat----cttcctctttatgttgcgaaagaggagtttgtagc 312  Q
    ||||||||||||||||||| | ||||||    ||| |||| |||||||| |||||||||||||||||    
T  35406768 gttcaaagtacatgatttggtgcatgatatatcttgctctctatgttgcaaaagaggagtttgtagc 35406834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University