View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_51 (Length: 243)
Name: NF15831_low_51
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_51 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 3063 - 2851
Alignment:
| Q |
17 |
atatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgagaactatgtacacattatggtccacattagatgaactgcttaaaacc |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||||| | |
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| T |
3063 |
atatgtgactatatgaatgcaggtaatgcaaacaaaaggaacttctaaattgacaactatgtacacattatggtcaacattagatggaccgcttaaaatc |
2964 |
T |
|
| Q |
117 |
aaaatcaacgatagaattgaaaataatgatgacggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgccaacatctttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2963 |
aaaatcaacgatagaattgaaaataatgatgagagtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgacaacatctttgt |
2864 |
T |
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| Q |
217 |
tgagaatgttcat |
229 |
Q |
| |
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||||||||||||| |
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| T |
2863 |
tgagaatgttcat |
2851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 24679063 - 24679275
Alignment:
| Q |
17 |
atatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgagaactatgtacacattatggtccacattagatgaactgcttaaaacc |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
24679063 |
atatgtgactatatgaatgcaggaaatggaaacaaaaggaacttctaaattgacaactatgtacacattatggtcaacattagatgaaccgtttaaaacc |
24679162 |
T |
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| Q |
117 |
aaaatcaacgatagaattgaaaataatgatgacggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgccaacatctttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
24679163 |
aaaatcaacgatagaattgaaaataatgatgagggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaataccaacatctttat |
24679262 |
T |
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| Q |
217 |
tgagaatgttcat |
229 |
Q |
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| T |
24679263 |
taagaatgttcat |
24679275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 25341564 - 25341362
Alignment:
| Q |
17 |
atatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgagaactatgtacacattatggtccacattagatgaactgcttaaaacc |
116 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||| |||||||||| |
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| T |
25341564 |
atatgtgactatatgaatgcaggaaatggaagcaaaatgaacttctaaattgacaactttgaacacattatggtcagaattagatgaaccgcttaaaacc |
25341465 |
T |
|
| Q |
117 |
aaaatcaacgatagaattgaaaataatgatgacggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgccaacatctttgt |
216 |
Q |
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||||||||||||| |||| | ||||||||| | |||||||||||||||||||||||||||||||| |||||| |||| |||||| ||| ||||||||||| |
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| T |
25341464 |
aaaatcaacgatataatttataataatgataagggtagttctttgttgagactcctaaggcttatgcccaataaaccagtggaattgcaaacatctttgt |
25341365 |
T |
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| Q |
217 |
tga |
219 |
Q |
| |
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||| |
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| T |
25341364 |
tga |
25341362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 25346047 - 25345845
Alignment:
| Q |
17 |
atatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgagaactatgtacacattatggtccacattagatgaactgcttaaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||| |||||||||| |
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| T |
25346047 |
atatgtgactatatgaatgcaggaaatggaagcaaaatgaacttctaaattgacaactttgaacacattatggtcagaattagatgaaccgcttaaaacc |
25345948 |
T |
|
| Q |
117 |
aaaatcaacgatagaattgaaaataatgatgacggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgccaacatctttgt |
216 |
Q |
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||||||||||||| |||| | ||||||||| | |||||||||||||||||||||||||||||||| |||||| |||| |||||| ||| ||||||||||| |
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| T |
25345947 |
aaaatcaacgatataatttataataatgataagggtagttctttgttgagactcctaaggcttatgcccaataaaccagtggaattgcaaacatctttgt |
25345848 |
T |
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| Q |
217 |
tga |
219 |
Q |
| |
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||| |
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|
| T |
25345847 |
tga |
25345845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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