View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15831_low_55 (Length: 238)

Name: NF15831_low_55
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15831_low_55
NF15831_low_55
[»] chr7 (13 HSPs)
chr7 (16-218)||(27147028-27147230)
chr7 (81-209)||(27157957-27158085)
chr7 (22-209)||(27133982-27134172)
chr7 (92-209)||(27165508-27165625)
chr7 (92-209)||(27220198-27220315)
chr7 (98-209)||(27281666-27281777)
chr7 (92-203)||(27304360-27304471)
chr7 (98-209)||(27296134-27296245)
chr7 (98-209)||(27271555-27271666)
chr7 (122-209)||(27243101-27243188)
chr7 (98-209)||(27249046-27249157)
chr7 (92-209)||(27301500-27301620)
chr7 (132-209)||(27312620-27312697)
[»] chr1 (2 HSPs)
chr1 (122-188)||(14889948-14890014)
chr1 (129-203)||(14884282-14884356)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 27147028 - 27147230
Alignment:
Q  16 aatatgaaacattgggagcaaagttgaattcgtgatatcttctcactctataaatacttaaattgcattcatctctacacacttgaattgcatttcctct 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27147028 aatataaaacattgggagcaaagttgaattcgtgatatcttctcactctataaatacttaaattgcattcatctctacacacttgaattgcatttcctct 27147127  T
Q  116 atcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgcagaccc 215  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || | |||||| |||| ||||||||||||||||||||||||||    
T  27147128 atcaaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttgtctgtgatgtgcttgcttttggccattccattagcaaatgcagaccc 27147227  T
Q  216 tga 218  Q
    |||    
T  27147228 tga 27147230  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 27157957 - 27158085
Alignment:
Q  81 cattcatctctacacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgc 180  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || | |||    
T  27157957 cattcatctccacacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttgtctgtgatgtgc 27158056  T
Q  181 ttggttttagccattccattagcaaatgc 209  Q
    |||||||| ||||||||||||||||||||    
T  27158057 ttggttttggccattccattagcaaatgc 27158085  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 27133982 - 27134172
Alignment:
Q  22 aaacattgggagcaaagttgaattcgtgatatcttctcactctataaatacttaa--attgcattcatctctacacac--ttgaattgcatttcctctat 117  Q
    |||||||| || |||||||||||| ||| |||||||| ||||||||||||||| |  ||| |||||||||| ||||||  |||||| |||||||||||||    
T  27133982 aaacattgtgaccaaagttgaattagtggtatcttctaactctataaatacttgatcattccattcatctccacacacacttgaatagcatttcctctat 27134081  T
Q  118 caaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc 209  Q
    |||| | |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | |||||||||| |||||||    
T  27134082 caaa-tctccaaaccatggctagctcaatgcttgttaagattacttgtatgtctatgctatgcttggttttggtcattccattatcaaatgc 27134172  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 27165508 - 27165625
Alignment:
Q  92 acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc 191  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| || ||||||||||||| ||    
T  27165508 acacaattgaattgcatttcctctatcaaaatttccaaatcatggctacctcaatgcttgttaagatcacttgtttgtctgtgatatgcttggttttggc 27165607  T
Q  192 cattccattagcaaatgc 209  Q
    |||||||||||| |||||    
T  27165608 cattccattagccaatgc 27165625  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 27220198 - 27220315
Alignment:
Q  92 acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc 191  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| |     
T  27220198 acacacttgaatagcatttcctctatcaaaatttccaaatcatggctagttcaatgcttttgaaggttacttgtttggctatgatatgcttggttttggg 27220297  T
Q  192 cattccattagcaaatgc 209  Q
    |||||||||||| |||||    
T  27220298 cattccattagccaatgc 27220315  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 27281666 - 27281777
Alignment:
Q  98 ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc 197  Q
    ||||||| ||||||||||  ||||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| | ||||||    
T  27281666 ttgaattacatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctatgatatgcttggttttgggcattcc 27281765  T
Q  198 attagcaaatgc 209  Q
    | |||| |||||    
T  27281766 actagccaatgc 27281777  T

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Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 27304360 - 27304471
Alignment:
Q  92 acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc 191  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| | ||  ||||||| ||| ||||| ||||||||||||| |     
T  27304360 acacacttgaattgcatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaagttacttgcttggctatgatatgcttggttttggg 27304459  T
Q  192 cattccattagc 203  Q
    ||||||| ||||    
T  27304460 cattccactagc 27304471  T

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Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 27296134 - 27296245
Alignment:
Q  98 ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc 197  Q
    ||||||||||||||||||   |||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||| | ||||||||||||| | ||||||    
T  27296134 ttgaattgcatttcctcttcaaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctacgatatgcttggttttgggcattcc 27296233  T
Q  198 attagcaaatgc 209  Q
    | |||| |||||    
T  27296234 actagccaatgc 27296245  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 27271555 - 27271666
Alignment:
Q  98 ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc 197  Q
    ||||||| ||||||||||  ||||||||||||||||||||||| ||||| ||| | ||| ||||||||||| ||||| |||||||||||||   ||||||    
T  27271555 ttgaattacatttcctcttccaaaatttccaaatcatggctagttcaatccttgtcaaggttacttgtttggctatgatatgcttggttttgagcattcc 27271654  T
Q  198 attagcaaatgc 209  Q
    | |||| |||||    
T  27271655 actagccaatgc 27271666  T

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Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 27243101 - 27243188
Alignment:
Q  122 atttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc 209  Q
    ||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| | ||||||| |||| |||||    
T  27243101 atttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctatgatatgcttggttttgggcattccactagccaatgc 27243188  T

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Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 27249046 - 27249157
Alignment:
Q  98 ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc 197  Q
    ||||||| ||||||||||   |||||||||||||||||||||| |||||| || | ||| ||||||||||| ||||| ||||||| ||||| | ||||||    
T  27249046 ttgaattacatttcctcttcgaaaatttccaaatcatggctagttcaatgtttgtcaaggttacttgtttggctatgatatgcttagttttgggcattcc 27249145  T
Q  198 attagcaaatgc 209  Q
    | |||| |||||    
T  27249146 actagctaatgc 27249157  T

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Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 27301500 - 27301620
Alignment:
Q  92 acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgctt---cttaagattacttgtttgtctatgctatgcttggtttt 188  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||| |||||||||    | ||  ||||||| ||| ||||| |||||||||||||    
T  27301500 acacacttgaatagcatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtgatcaaagttacttgcttggctatgatatgcttggtttt 27301599  T
Q  189 agccattccattagcaaatgc 209  Q
       |||||||||||| |||||    
T  27301600 gtgcattccattagccaatgc 27301620  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 27312620 - 27312697
Alignment:
Q  132 catggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc 209  Q
    |||||||||||||||| || | ||||||||||  ||| ||||| ||||||||||||| | || ||| ||||| |||||    
T  27312620 catggctagctcaatgtttgtcaagattactttcttggctatgatatgcttggttttgggcactcccttagccaatgc 27312697  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 14890014 - 14889948
Alignment:
Q  122 atttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggtttt 188  Q
    ||||||||||||||||||| |||||||||   ||| ||||||||||| ||||| |||||||||||||    
T  14890014 atttccaaatcatggctagttcaatgcttaccaaggttacttgtttggctatgatatgcttggtttt 14889948  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 14884356 - 14884282
Alignment:
Q  129 aatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagc 203  Q
    |||||||||||| |||||||||   ||| ||||||||||| ||||| ||||||||||||| | ||||||| ||||    
T  14884356 aatcatggctagttcaatgcttaccaaggttacttgtttggctatgttatgcttggttttgggcattccaatagc 14884282  T

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