View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15831_low_56 (Length: 236)

Name: NF15831_low_56
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15831_low_56
NF15831_low_56
[»] chr7 (2 HSPs)
chr7 (1-221)||(6368776-6368996)
chr7 (1-221)||(6377241-6377461)
[»] scaffold0929 (1 HSPs)
scaffold0929 (1-218)||(212-429)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6368776 - 6368996
Alignment:
Q  1 tcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttctaaataaagggtaagaaaatggtgtgacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6368776 tcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttctaaataaagggtaggaaaatggtgtgacag 6368875  T
Q  101 tgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttggtgtgtttttaccaaagagaagttccatagcttcgaacttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6368876 tgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttgatgtgtttttaccaaagagaagttccatagcttcgaacttcat 6368975  T
Q  201 ttagagagaaagagtgactag 221  Q
    |||||||||||||||||||||    
T  6368976 ttagagagaaagagtgactag 6368996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6377241 - 6377461
Alignment:
Q  1 tcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttctaaataaagggtaagaaaatggtgtgacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6377241 tcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttctaaataaagggtaggaaaatggtgtgacag 6377340  T
Q  101 tgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttggtgtgtttttaccaaagagaagttccatagcttcgaacttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6377341 tgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttgatgtgtttttaccaaagagaagttccatagcttcgaacttcat 6377440  T
Q  201 ttagagagaaagagtgactag 221  Q
    |||||||||||||||||||||    
T  6377441 ttagagagaaagagtgactag 6377461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0929 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0929
Description:

Target: scaffold0929; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 212 - 429
Alignment:
Q  1 tcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttctaaataaagggtaagaaaatggtgtgacag 100  Q
    |||||||||  |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  212 tcatttaaatcatcaaatgcagtggatggttgattggtttttttaatgtttttcaaggatgaaggatttctaaataaagggtaggaaagtggtgtgacag 311  T
Q  101 tgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttggtgtgtttttaccaaagagaagttccatagcttcgaacttcat 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  312 tgaagacaagtattgcaaaaattgctagtaatgttacttttggaatcatttgttttggtgtgtttttaccaaagagaagttccatagcttggaacttcat 411  T
Q  201 ttagagagaaagagtgac 218  Q
    ||||||||||||||||||    
T  412 ttagagagaaagagtgac 429  T

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