View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_57 (Length: 231)
Name: NF15831_low_57
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 20486223 - 20486055
Alignment:
| Q |
15 |
gaagaaaagcaatgccttgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattcctttgta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
20486223 |
gaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtagtacattctcatattagacagtacaattcctttgta |
20486124 |
T |
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| Q |
115 |
taaataactggatgtacactcttttcaaaattcaatgaatcagtttctatctttctttgattcttaata |
183 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20486123 |
taaataacctgatgtacactcttttcataattcaatgaatcagtttctatctttctttgattcttaata |
20486055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 20481401 - 20481230
Alignment:
| Q |
15 |
gaagaaaagcaatgccttgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattcctttgta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
20481401 |
gaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtagtacattctcatattagacagtacaattcctttgta |
20481302 |
T |
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| Q |
115 |
taaataactggatgtacactcttttcaaaattcaatgaatcagtttctatctttctttgattcttaataatt |
186 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20481301 |
taaataacctgatgtacactcttttcataattcaatgaatcagtttctatatttctttgattcttaataatt |
20481230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 28019795 - 28019949
Alignment:
| Q |
32 |
tgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattcctttgtataaataactggatgtac |
131 |
Q |
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| T |
28019795 |
tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtagtacattcacatataagatagtacaattcatttgtataaataactggatgtac |
28019894 |
T |
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| Q |
132 |
---actcttttcaaaattcaatgaatcagtttctatctttctttgattcttaata |
183 |
Q |
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||||||||||| ||||||||||||| || |||||||||||||||||||||| |
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|
| T |
28019895 |
agtactcttttcaatcttcaatgaatcagattttatctttctttgattcttaata |
28019949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 28014972 - 28015127
Alignment:
| Q |
32 |
tgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattcctttgtataaataactggatgtac |
131 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
28014972 |
tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtagtacattcacatataagatagtacaattcatttgtataaataactggatgtac |
28015071 |
T |
|
| Q |
132 |
---actcttttcaaaattcaatgaatcag-tttctatctttctttgattcttaata |
183 |
Q |
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||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
28015072 |
agtactcttttcaatcttcaatgaatcagttttttatctttctttgattcttaata |
28015127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 32622128 - 32621960
Alignment:
| Q |
15 |
gaagaaaagcaatgccttgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcaca-tattagatagtacaattcctttgt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||| |||| |
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| T |
32622128 |
gaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagcagtactttctcattattagatagtacaattcccttgt |
32622029 |
T |
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| Q |
114 |
ataaataactggatgtacactcttttcaaaattcaatgaatcagtttctatctttctttgattcttaata |
183 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32622028 |
ataaataaccagatgtacactctttt-aaaattcaatgaatcagtttctatctttctttgattcttaata |
32621960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 6344766 - 6344921
Alignment:
| Q |
32 |
tgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattcctttgtataaataactggatgtac |
131 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
6344766 |
tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtagtacattcacatataagatagtacaattcatttgtataaataactggatgtac |
6344865 |
T |
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| Q |
132 |
---actcttttcaaaattcaatgaatcagtttctatctttctttgattcttaataa |
184 |
Q |
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|||||||| || |||||||||||||||| ||||||||||||||||||||||| |
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| T |
6344866 |
agtactctttttaatcttcaatgaatcagtttttatctttctttgattcttaataa |
6344921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 6339943 - 6340098
Alignment:
| Q |
32 |
tgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattcctttgtataaataactggatgtac |
131 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
6339943 |
tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtagtacattcacatataagatagtacaattcatttgtataaataactggatgtac |
6340042 |
T |
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| Q |
132 |
---actcttttcaaaattcaatgaatcag-tttctatctttctttgattcttaata |
183 |
Q |
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||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
6340043 |
agtactcttttcaatcttcaatgaatcagttttttatctttctttgattcttaata |
6340098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 16988565 - 16988397
Alignment:
| Q |
15 |
gaagaaaagcaatgccttgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcaca-tattagatagtacaattcctttgt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||| |||| |
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| T |
16988565 |
gaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagcagtactttctcattattagatagtacaattcccttgt |
16988466 |
T |
|
| Q |
114 |
ataaataactggatgtacactcttttcaaaattcaatgaatcagtttctatctttctttgattcttaata |
183 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16988465 |
ataaataaccagatgtacactcttttc-aaattcaatgaatcagtttctatctttctttgattcttaata |
16988397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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