View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15831_low_6 (Length: 520)
Name: NF15831_low_6
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Original strand, 39032415 - 39032912
Alignment:
| Q |
12 |
ataggggtgcgcatgagccaactcaacctgaagacccgtcccaactcaatagtttcgggtatggtgcatgttccagaaatctaggaaatgggggctgaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39032415 |
ataggggtgcgcatgagccaactcaacatgaagacccgtcccaactcaatagtttcgggtatggtgcatgttccagaaatctaggaaatgggggctgaaa |
39032514 |
T |
|
| Q |
112 |
aaattattgaaaggaaagattttggnnnnnnnn-----------atttagatatgaaaatttgcctgaatttgtgtagtcattgcaaaatcgttggtcat |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39032515 |
aaattattgaaaggaaagattttgctttttttttttatttttttatttagatatgaatatttgcctgaatttttgtagtcattgcaaaatcgttggtcat |
39032614 |
T |
|
| Q |
201 |
ggctttgatgaatacatgcggatcgataaagacgaggtgaatatttatgatgttgaggttaagatcaaaagaaaatcaatgaggtaaaaactgttattat |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||| |
|
|
| T |
39032615 |
ggctttgatgaatacaagcggatcgataaagaccaaatgaatatttatgatgttgaggttaagatcaaaagaaaaccgatgaggttaaaagtgttattat |
39032714 |
T |
|
| Q |
301 |
ggattagcgtatggcttgttcttgaatgaagttaacaatcttgttaattttaaggataatgctacttctctcgacatattttctagcaaaaagatgacga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
39032715 |
ggattagcgtatggcttgttcttgaatgaagttaacaatcttgttaattttaaggataatgctacttctcgcgacata-tttctagcaaaaagatgacga |
39032813 |
T |
|
| Q |
401 |
ccttgttgctagnnnnnnnnattgcaactacaattaatcaactctttcttttttatccaaccacccatgatgtccaccaatttagatctaacggtgacat |
500 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39032814 |
ccttgttgctag-tttttttattgcaactac----aatcgactctttcttttttatccaaccacccatgatgtccaccaatttagatctaacggtgacat |
39032908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University