View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15832_low_1 (Length: 689)
Name: NF15832_low_1
Description: NF15832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15832_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 213 - 673
Target Start/End: Complemental strand, 31263643 - 31263184
Alignment:
| Q |
213 |
gtgaagatttccactagacataacaaaacattaaatctcagaaactaggattaaatnnnnnnngtgaagaatttcattggacataacagaacacattaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31263643 |
gtgaagatttccactagacataacaaaacattaaatctcagaaactaggattaaataaaaaaagtgaagaatttcattggacataacagaacacattaaa |
31263544 |
T |
|
| Q |
313 |
atcccacaaactaggattaaataaaaaagtgaagattttcattgaaaatacagaacattaaatcccacaaactagataaacatattaaatataacataac |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263543 |
-tcccacaaactaggattaaataaaaaagtgaagattttcattgaaaatacagaacattaaatcccacaaactagataaacatattaaatataacataac |
31263445 |
T |
|
| Q |
413 |
ttaatacaactccacatcagctactcactttcactcgaaacatacaacattggttcagtttcttctcctgatctccaactaaacatttcttcaacatcat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263444 |
ttaatacaactccacatcagctactcactttcactcgaaacatacaacattggttcagtttcttctcctgatctccaactaaacatttcttcaacatcat |
31263345 |
T |
|
| Q |
513 |
gatatttatgaaaaaccctaacaacataacttgttttctagttatcgttatcatcaaccaaagagatgtaaggaaagacatgcaatatcaatgatccttc |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263344 |
gatatttatgaaaaaccctaacaacataacttgttttctagttatcgttatcatcaaccaaagagatgtaaggaaagacatgcaatatcaatgatccttc |
31263245 |
T |
|
| Q |
613 |
aagtgtcagcacgagctaaatagaaaaattagtttagttattgttttaactataataaaat |
673 |
Q |
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| T |
31263244 |
aagtgtcagcacgagctaaatagaaaaagtagtttagttattgttttaactataataaaat |
31263184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 31263840 - 31263697
Alignment:
| Q |
16 |
aaaactactgatgaataatttttcacacagaaaagaaatagattacttgcttgtacaattgtgctcatctacttcaagctgttggttatatgaaaatatc |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
31263840 |
aaaactactgatgaataatttttcacttagaaaagaaatagattatttgcttgtacaattatgctcatctgcttcaagctgttggttatatgaaaatatc |
31263741 |
T |
|
| Q |
116 |
ggttgaacactacaaaattttaataaccactccaatgaagtacc |
159 |
Q |
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| T |
31263740 |
ggttgaacactacaaaattttaataaccactccaatgaagtacc |
31263697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 7e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 328 - 587
Target Start/End: Original strand, 15853948 - 15854212
Alignment:
| Q |
328 |
attaaataaaaaagtgaagattttcattgaaaata-cagaacattaaatcccacaaactag-ataaacatattaaatataacataacttaatacaactcc |
425 |
Q |
| |
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||||||||||| ||||||||| |||||||| ||| || |||||| | |||||||||||| |||||||||||||||||||||||||| |||| |||||| |
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| T |
15853948 |
attaaataaaagagtgaagatcatcattgaacatatcataacattgacacccacaaactaggataaacatattaaatataacataactaaatataactcc |
15854047 |
T |
|
| Q |
426 |
acatcagctactcactttcactcgaaacat---acaacattggttcagtttcttctcctgatctccaactaaacatttcttcaacatcatgatatttatg |
522 |
Q |
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| ||||||||||||||||||||||| |||| ||||||| | |||||||||||||| ||||||||||| ||| ||||||||||||||| ||| |||| |
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| T |
15854048 |
atatcagctactcactttcactcgatacatacaacaacatcgattcagtttcttctcttgatctccaacgaaatatttcttcaacatcaagatctttaca |
15854147 |
T |
|
| Q |
523 |
aaaaaccctaacaacataacttgttttctagttatcgttatcatcaaccaaagagatgtaaggaa |
587 |
Q |
| |
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|| | ||||| | | ||| ||||||||| |||||||| ||||||||| | ||| |||||||||| |
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| T |
15854148 |
aagagccctaggatcttaatttgttttcttgttatcgtcatcatcaacaatagacatgtaaggaa |
15854212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 15853835 - 15853888
Alignment:
| Q |
88 |
ttcaagctgttggttatatgaaaatatcggttgaacactacaaaattttaataa |
141 |
Q |
| |
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|||||||| |||| || ||||||||| ||||||||||||||||||||||||| |
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| T |
15853835 |
ttcaagctattggataattgaaaatatttgttgaacactacaaaattttaataa |
15853888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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