View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15832_low_2 (Length: 392)
Name: NF15832_low_2
Description: NF15832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15832_low_2 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 31214872 - 31215257
Alignment:
| Q |
1 |
cttacactgcattcgttagttcatggtaggacagacaaatcaagatctcatggtgtgttcctttttcaatnnnnnnnnctggtttcctgaatattatgtt |
100 |
Q |
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| T |
31214872 |
cttacattgcattcgttagttcatggtaggacagacaaatcaagatctcatggtgtgttcctttttcaataaaaaaaactggtttcctgaatattatgtt |
31214971 |
T |
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| Q |
101 |
ctatgtatgtaattaataggtagtctaaacagatacaaaaaattgatacaaacacagacacagacatataaacaccgataataagttaacaaaatagaag |
200 |
Q |
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| T |
31214972 |
ctatgtatgtaattaataggtagtctaaacagatacaaaaaattgataca------gacacagacacataaacaccggtaataagttaacaaaatagaag |
31215065 |
T |
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| Q |
201 |
tcattgaatgtaaacacaagtatcagtcacatataggacaccagacacacttgtaatttaaagtgtcagtgctacataactaaacacataagaaaacttt |
300 |
Q |
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| T |
31215066 |
ttattgaatgtaaccacatgtatcagtcacatatagaacaccagacacacttataatttaaagtgtcagtgctacataactaaacacataagaaaacttt |
31215165 |
T |
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| Q |
301 |
aaatttaaccttactttggtatcctgtgatgttctgtaggagttcttctaacttcccacaagtggagtggatcttcctctcatcctgctaat |
392 |
Q |
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| T |
31215166 |
aaatttaaccttactatggtatcctgtgatgttctgtaggagttcttctgacttcccacaagtggagtggatcttcctctcatcctgctaat |
31215257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 31201747 - 31201879
Alignment:
| Q |
79 |
ctggtttcctgaatattatgttctatgtatgtaattaataggtagtctaaacagatacaaaaaattgatacaaacacagacacagacatataaacaccga |
178 |
Q |
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| T |
31201747 |
ctggtttcttgaatattatgttctatgtatgtaatta-taggaagtctaaacagatatgaaaaattgatacaaacacagacac------ataaacaccgg |
31201839 |
T |
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| Q |
179 |
taataagttaacaaaatagaagtcattgaatgtaaacaca |
218 |
Q |
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| T |
31201840 |
taataagtcaacaaaatagaagttgttgaatgtaaccaca |
31201879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 375
Target Start/End: Original strand, 31201889 - 31202014
Alignment:
| Q |
250 |
cttgtaatttaaagtgtcagtgctacataactaaacacataagaaaactttaaatttaaccttactttggtatcctgtgatgttctgtaggagttcttct |
349 |
Q |
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| T |
31201889 |
cttgtaatttaaagtgttggtgctacatagctacacacataagcaaacttgaaatttggccttactatggtatcctgtgatgttctgcaggagttcttct |
31201988 |
T |
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| Q |
350 |
aacttcccacaagtggagtggatctt |
375 |
Q |
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| T |
31201989 |
gatttcccacaattggagaggatctt |
31202014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31214471 - 31214434
Alignment:
| Q |
1 |
cttacactgcattcgttagttcatggtaggacagacaa |
38 |
Q |
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| T |
31214471 |
cttacattgcattcgttagttcatggtaggacagacaa |
31214434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 30499353 - 30499388
Alignment:
| Q |
2 |
ttacactgcattcgttagttcatggtaggacagaca |
37 |
Q |
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| T |
30499353 |
ttacattgcattcgttagttcatggtaggacagaca |
30499388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 31652450 - 31652490
Alignment:
| Q |
173 |
caccgataataagttaacaaaatagaagtcattgaatgtaa |
213 |
Q |
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| T |
31652450 |
caccgataataatttaagaaaatagaagtgattgaatgtaa |
31652490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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