View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15832_low_4 (Length: 253)
Name: NF15832_low_4
Description: NF15832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15832_low_4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 44914472 - 44914712
Alignment:
| Q |
13 |
attattctgtgtgatgtatgcatcctaatgacgttgaacttgtgtttcagcccaatttgcagataaagcgaccgaggaatgctgtcacttctagtaataa |
112 |
Q |
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| T |
44914472 |
attattctgtgtgatgtatgcatcctaatgacgttgaacttgtgtttcagcccaatttgcagataaagcgaccgaggaatgctgtcacttctagtaataa |
44914571 |
T |
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| Q |
113 |
aatagatggggaaaaagtccgtatagatagagtgctagagaattcaaaaagcaggctgggtgattcaagaaccactacatcaaatgctattgtgaaacag |
212 |
Q |
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| T |
44914572 |
aatagatggggaaaaagtccgtatagatagagtgctagagaattcaaaaagcaggctgggtgattcaagaatcactacatcaaatgctattgtgaaacag |
44914671 |
T |
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| Q |
213 |
actcttgaaaatccagcaatgcagaatcttaatccaagcat |
253 |
Q |
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| T |
44914672 |
actcttgaaaatccagcaatgcagaatcttaatccaagcat |
44914712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 7748179 - 7748419
Alignment:
| Q |
25 |
gatgtatgcatcctaatgacgttgaacttgtgtttcagcccaatttgcagataaagcgaccgaggaat------------gctgtcacttctagtaataa |
112 |
Q |
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| T |
7748179 |
gatgtatgcatcctaatgttgttgaacttgtgtttcagcttaatttgcagagaaagcgattaaggaatatcccagagttagccgtcacttctagtaacaa |
7748278 |
T |
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| Q |
113 |
aatagatggggaaaaagtccgtatagatagagtgctagagaattcaaaaagcaggctgggtgattcaagaaccactacatcaaatgctattgtgaaacag |
212 |
Q |
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| T |
7748279 |
aatccatggcaaaaaagtatgcatagatagagtacaagagaactcaaacaacaggttgggtgattcgggagtcactacatcaaatgctattgtacaacag |
7748378 |
T |
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| Q |
213 |
actcttgaaaatccagcaatgcagaatcttaatccaagcat |
253 |
Q |
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| T |
7748379 |
actcttgaaaatccagcaatgcaaaatcttaacccaagcat |
7748419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 2337551 - 2337802
Alignment:
| Q |
14 |
ttattctgtgtgatgtatgcatcctaatgacgttgaacttgtgtttcagcccaatttgcagataaagcgaccgaggaat------------gctgtcact |
101 |
Q |
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| T |
2337551 |
ttattgtgtgtgatgtatgcatcctaatgattttgaacttgtgtttcagctcaatttgcagaggaagcgattgaggaatatcccagagtttgctgtcgct |
2337650 |
T |
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| Q |
102 |
tctagtaataaaatagatggggaaaaagtccgtatagatagagtgctagagaattcaaaaagcaggctgggtgattcaagaaccactacatcaaatgcta |
201 |
Q |
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| T |
2337651 |
tctagtaataatatccatgggataaaagtatacatagatagagtgcaagagaacacaaaaagcaggttgaatgattcaagaatcactacatcaaatgcta |
2337750 |
T |
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| Q |
202 |
ttgtgaaacagactcttgaaaatccagcaatgcagaatcttaatccaagcat |
253 |
Q |
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| T |
2337751 |
ttgtgaaacagactcttaaaaatttagcagtgcaaaatcttaatccaagcat |
2337802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 2338189 - 2338346
Alignment:
| Q |
96 |
gtcacttctagtaataaaatagatggggaaaaagtccgtatagatagagtgctagagaattcaaaaagcaggctgggtgattcaagaaccactacatcaa |
195 |
Q |
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|||||||||||||||||||| |||| |||||| | |||||| | |||| ||||| ||| | |||||| | ||||| || |||| ||||||||||| |
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| T |
2338189 |
gtcacttctagtaataaaatccctgggaaaaaagaatgcatagatggtgtgcatgagaactcagatagcaggttcggtgagtcgagaatcactacatcaa |
2338288 |
T |
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| Q |
196 |
atgctattgtgaaacagactcttgaaaatccagcaatgcagaatcttaatccaagcat |
253 |
Q |
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| T |
2338289 |
atgctattgtgaaacagactcttgaaaatccagtaatgcaaaatcttaatccaagcat |
2338346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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