View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15833_high_10 (Length: 266)
Name: NF15833_high_10
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15833_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 38867685 - 38867519
Alignment:
| Q |
1 |
ctctattcttgtacacatcttcactatttgagtttgatccaatcttcgacctcttcaaacctatgtgaatagtgtccttctaccgaggactctatgaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867685 |
ctctattcttgtacacatcttcactatttgagcttgatccaatcttcgacctcttcaaacctatgtgaatagtgtccttctaccgaggactctatgaaga |
38867586 |
T |
|
| Q |
101 |
ggctctaaattccggtctccgatatctttgacaaattagtacttcaaagttttattcacccactctt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867585 |
ggctctaaattccggtctccgatatctttgacaaattagtacttcaaagttttattcacccactctt |
38867519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 38866538 - 38866463
Alignment:
| Q |
170 |
tgagtttttgaataagttctaaaagttttcactacatgatttgaggaaattttaccatgcacccttacaatcatac |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38866538 |
tgagtttttgaataagttctaaaagttttcactacatgatttgaggaaattttaccatgcacccttacaatcatac |
38866463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University