View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15833_high_15 (Length: 240)
Name: NF15833_high_15
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15833_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 24616242 - 24616459
Alignment:
| Q |
18 |
caaaaataagtgcaagctgttcttcaaactgtcattacaaagaggattcacaacattgcaactttgatggtagtagcttgttgttggaggatccacttta |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24616242 |
caaaaataagtgcaagctgttctccaaactgtcattacaaagaggattcacaacattgcaactttgatggcagtagcttgttgttggaggatccacttta |
24616341 |
T |
|
| Q |
118 |
gtggcttttccgttccatcgcctac--------tagcaggttatca-nnnnnnnncataattaaattagcaatctctttgtttatttattctgacattca |
208 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24616342 |
gtggcttttccgttccatcgcctacaactacgatagcaggttatcatttttttttcataattaaattagcaatctctttgtttatttattctgacattca |
24616441 |
T |
|
| Q |
209 |
cttcattaatattttctt |
226 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24616442 |
cttcattaatattttctt |
24616459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 24107858 - 24107655
Alignment:
| Q |
19 |
aaaaataagtgcaagctgttcttcaaactgtcattacaaagaggattcacaacattgcaactttgatggtagtagcttgttgttg-gaggatccacttta |
117 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||||||| ||| | ||||||||||| ||| |||| ||||||||| |
|
|
| T |
24107858 |
aaaaataagtgcaagctgtcct--aaactgtcattacaaagaggatgcacagcattgcaacttcgatagcagtagcttgttcttgagagggtccacttta |
24107761 |
T |
|
| Q |
118 |
gtggcttttccgttccatcgcctac--------tagcaggttatca-nnnnnnnncataattaaattagcaatctctttgtttatttattctgacattca |
208 |
Q |
| |
|
|| ||||| ||||||| ||||| ||||||||||||| |||| |||||||| |||||||||||||||||| |||||||||| | |
|
|
| T |
24107760 |
cccgcgtttcc-ttccatcacctacaactttgatagcaggttatcattattttttcatacttaaattaacaatctctttgtttatttgttctgacattta |
24107662 |
T |
|
| Q |
209 |
cttcatt |
215 |
Q |
| |
|
||||||| |
|
|
| T |
24107661 |
cttcatt |
24107655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 24114407 - 24114366
Alignment:
| Q |
165 |
ataattaaattagcaatctctttgtttatttattctgacatt |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24114407 |
ataattaaattaacaatctctttgtttatttattcttacatt |
24114366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University