View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15833_high_4 (Length: 337)
Name: NF15833_high_4
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15833_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 49 - 307
Target Start/End: Original strand, 39844609 - 39844878
Alignment:
| Q |
49 |
caacagtggcctggcagcaccaatatatgaaggagtaagtggcaatgatatacgggtaatatgttattcagcattcaaagatcctcttccattttcttta |
148 |
Q |
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| T |
39844609 |
caacagtggcctggcagcaccaatatatcaaggagtaagtggcaatgatatacctgtaatatgttattcagcattcaaagatcctcttccattttcttta |
39844708 |
T |
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| Q |
149 |
cattagtatatagatcagaaattaacaaatttccat---tcag--------cacaagtgtaaaactgtaatcaaactgaattgagcggctattaattaac |
237 |
Q |
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| T |
39844709 |
cattagtatacagatcagaaattaacaaatttccatgtatcagaaattcgacacaagtgtaaaactgtaatcaaactgaattgagcggctattaattaac |
39844808 |
T |
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| Q |
238 |
agttatcaatcaactgcagatcttcacgaaaaggacagtttacgaaaacaaaggacgggtgagtctactt |
307 |
Q |
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| T |
39844809 |
agttatcaatcaactgcagatcttcacgaaaaggacagcctacgaaaacaaaggaagggcgagtctactt |
39844878 |
T |
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