View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15833_high_9 (Length: 276)
Name: NF15833_high_9
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15833_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 37444220 - 37444481
Alignment:
| Q |
15 |
actcgcatcaaatgattgagcaacatttgggcaaactacactggcactattactcatatgtgttgtgttgaattcattttctgggatatggtagcctcct |
114 |
Q |
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| T |
37444220 |
actcgcatcaattgattgagcaacatttgggcaaactacactggcactatcactcatatgtgttgtgttgaattcattttctgggatatggtagcctcct |
37444319 |
T |
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| Q |
115 |
agcaacatgttattaatgtgacttggcagttcatattttaaccaatctggtccacttggttgtgcttgtatgcaacttgctcgtgggacagactccattg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37444320 |
agcaacatgttattaatgtgacttggcagttcatattttaaccaatctggtccacttggttgtgcttgtatgcaacttgctcgtgggacagactccattg |
37444419 |
T |
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| Q |
215 |
aaagtgaagtgtcataatgaaagccttgactccaagatgtggacatcatcggatcttgaagc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37444420 |
aaagtgaagtgtcataatgaaagccttgactccaagatgtggacatcatcggatcttgaagc |
37444481 |
T |
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