View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15833_low_1 (Length: 896)
Name: NF15833_low_1
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15833_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 425
Target Start/End: Original strand, 43230686 - 43231101
Alignment:
| Q |
10 |
gagatgaatgagttgttgtcagagcgacatgtgaaggaagaatgataaaattgatggttgagcatgagagtattgattaatgcttttccagcaagtttcc |
109 |
Q |
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| T |
43230686 |
gagatgaatgagttgttgtcggagcgacatgtgaaggaagaatgataaagttgatggttgagcatgagagtattgattaatgcttttccagcaagtttcc |
43230785 |
T |
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| Q |
110 |
cacgtttgagaattaaattgaggtctaccattgttttgctcttggctatgccttttcttataatgaacaataatacacgtaccatgttccatagcttctt |
209 |
Q |
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| T |
43230786 |
cacgtttgagaatcaaattgaggtgtaccattgttttgctcttggctatgccttttcttataatgaacaataatacacgtaccatgttccatagcttctt |
43230885 |
T |
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| Q |
210 |
tgccaccacgccttgccttgcttcaatttccattttctgagactacgatgatgagtatgttatgttgtttcttttgtctgtgtataattgaaattaaaat |
309 |
Q |
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| T |
43230886 |
tgccaccacgccttgccttgcttcaatttccattttctgagactacgatgatgagtatgttatgttgtttcttttgtctgcgtataattgaaattaaaat |
43230985 |
T |
|
| Q |
310 |
taaagaaactcttggaagaggtccgtgagggagataatgattagagtttgttttggtgtgtgatggggtttgagggggttggaagctatttaaatgagtg |
409 |
Q |
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| T |
43230986 |
taaagaaactcttggaagaggtgcgtgagggagataatgattagagtttgttttggtgtgtgatggggtttgagggggttggaagctatttaaatgagtg |
43231085 |
T |
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| Q |
410 |
gtatgcaagcaacatg |
425 |
Q |
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| T |
43231086 |
gtatgcaagcaacatg |
43231101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 564 - 881
Target Start/End: Original strand, 43231256 - 43231574
Alignment:
| Q |
564 |
cttcaaaccgccttatcaaaa-taaacataaattggaaaattaagaaaatcattggaaggtcactcacgccctataagagaggaagaataagtggttgaa |
662 |
Q |
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| T |
43231256 |
cttcaaaccgccttatcaaaaataaacataaattggaacattaagaaaatcattggaaggtcacacacgccctataagagaggaagaataagtggttgaa |
43231355 |
T |
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| Q |
663 |
gttgtttgtgcattacatggaagttaagttgcagtgtagtagaaggtctccatgaaattgatgggtaggagctcatatttaatttactactaaatcaatc |
762 |
Q |
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| T |
43231356 |
gttgtttatgcattacatggaatttaagttgcagtgtagtagaaggtctccatgaaattgatgggtaggagctcatatttaatttactactaaatcaatc |
43231455 |
T |
|
| Q |
763 |
aattcaattgttagcatataattaattgaagagatgatttgggtggcgctgtgttcttgtagtcaaagattagcatttgccgtagagactaagctacaat |
862 |
Q |
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| T |
43231456 |
aattcaattgttagcatataattaattgaagagatgatttgggtggcgctgtgttcttgtagtcaaagattagcatttgccgtagagactaagctacaat |
43231555 |
T |
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| Q |
863 |
caaatgaagcatttgatct |
881 |
Q |
| |
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||||||| ||||||||||| |
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| T |
43231556 |
caaatgacgcatttgatct |
43231574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 43235173 - 43235240
Alignment:
| Q |
178 |
aataatacacgtaccatgttccatagcttctttgccaccacgccttgccttgcttcaatttccatttt |
245 |
Q |
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|||||||||| |||||||||||||||||||||||| || | | ||||||||||| |||||| |||||| |
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| T |
43235173 |
aataatacacttaccatgttccatagcttctttgctacgatgtcttgccttgctccaattttcatttt |
43235240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 473
Target Start/End: Original strand, 43231121 - 43231154
Alignment:
| Q |
440 |
gcaattcaagcaacacggttgttttttaattgaa |
473 |
Q |
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| T |
43231121 |
gcaattcaagcaacacggttgttttttaattgaa |
43231154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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