View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15833_low_11 (Length: 280)
Name: NF15833_low_11
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15833_low_11 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 38235565 - 38235306
Alignment:
| Q |
6 |
aacttcatcttctcttgttcccggcacggtggcggcggtagtggtggtggagtagctgtagctgtaactctcacctacactgcatgtttctgaaatgaca |
105 |
Q |
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| T |
38235565 |
aacttcatcttctcttgtttccggcacggtggcggtggtggtggtggtggagtagctgtagctgtaactctcacctacactgcatgtttctgaaatgaca |
38235466 |
T |
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| Q |
106 |
gaaatttcttcagaaggttcctcctccaatggttttttcatgatggggtcttttgtaatttccatattttgcatttgggtcattgtttcttgtgtcaaat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235465 |
gaaatttcttcagaaggttcctcctccaatggttttttcatgatggggtcttttgtaatttccatattttgcatttgggtcattgtttcttgtgtcaaat |
38235366 |
T |
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| Q |
206 |
ttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacag |
265 |
Q |
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| T |
38235365 |
ttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacag |
38235306 |
T |
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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 38644006 - 38643908
Alignment:
| Q |
167 |
ccatattttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacag |
265 |
Q |
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| T |
38644006 |
ccatattttgcatttgggtcattgtttcttgtgtcaaataaggaacttgttggggtttagaaattggtgtttctttttcaaatagtacctctttcacag |
38643908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 13597732 - 13597624
Alignment:
| Q |
6 |
aacttcatcttctcttgttcccggcacggtggcggcggtagtggtggtggagtagctgtagctgtaactctcacctacactgcatgtttctgaaatgaca |
105 |
Q |
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| T |
13597732 |
aacttcgtcttctcttgtttccggcacggtggcagtggc---gatggtggagtagttgtagctgtaactcccacctacactgcatggttctgaaatgaca |
13597636 |
T |
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| Q |
106 |
gaaatttcttca |
117 |
Q |
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| T |
13597635 |
gaaatttcttca |
13597624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 13597502 - 13597450
Alignment:
| Q |
172 |
ttttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggttt |
224 |
Q |
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| T |
13597502 |
ttttgcatacgggtcattatttcttatgtcaaatttggaacttgttgaggttt |
13597450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 37609892 - 37609821
Alignment:
| Q |
46 |
gtggtggtggagtagctgtagctgtaactctcacctacactgcatgtttctgaaatgacagaaatttcttca |
117 |
Q |
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| T |
37609892 |
gtggcggtggagtagctgtagctgtaactcccacctacactgcatggttctgaaatgacagaaatttcttca |
37609821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 37609699 - 37609647
Alignment:
| Q |
172 |
ttttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggttt |
224 |
Q |
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| T |
37609699 |
ttttgcatatgggtcattatttcttatgtcaaatttggaacttgttgaggttt |
37609647 |
T |
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Target: scaffold0176 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 16823 - 16888
Alignment:
| Q |
200 |
tcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacag |
265 |
Q |
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| T |
16823 |
tcaaagttggaacttgttggggtttgaaaattggtgtttctatgtcaaatagaacttctttcacag |
16888 |
T |
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