View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15833_low_3 (Length: 455)

Name: NF15833_low_3
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15833_low_3
NF15833_low_3
[»] chr7 (15 HSPs)
chr7 (305-440)||(43940397-43940531)
chr7 (58-139)||(43940532-43940613)
chr7 (148-218)||(25614710-25614780)
chr7 (148-215)||(43255456-43255523)
chr7 (148-218)||(37149364-37149434)
chr7 (151-219)||(33050294-33050362)
chr7 (152-219)||(48057390-48057457)
chr7 (148-219)||(32315937-32316008)
chr7 (148-219)||(42431834-42431905)
chr7 (186-219)||(48086970-48087003)
chr7 (163-215)||(8235624-8235676)
chr7 (148-216)||(8742497-8742565)
chr7 (151-219)||(26041421-26041489)
chr7 (151-219)||(27164729-27164797)
chr7 (151-219)||(44511250-44511318)
[»] chr3 (12 HSPs)
chr3 (145-219)||(30633700-30633774)
chr3 (151-219)||(11327219-11327287)
chr3 (148-219)||(50652499-50652570)
chr3 (146-218)||(44855363-44855435)
chr3 (151-215)||(50279979-50280043)
chr3 (151-219)||(52453984-52454052)
chr3 (151-218)||(9582051-9582118)
chr3 (148-219)||(54233390-54233461)
chr3 (151-219)||(13159772-13159840)
chr3 (151-219)||(20714354-20714422)
chr3 (187-219)||(30400084-30400116)
chr3 (151-219)||(36819067-36819135)
[»] chr2 (15 HSPs)
chr2 (162-218)||(3299008-3299064)
chr2 (144-215)||(17826162-17826233)
chr2 (148-216)||(42141499-42141567)
chr2 (148-219)||(5962749-5962820)
chr2 (151-219)||(22353067-22353135)
chr2 (151-219)||(37966467-37966535)
chr2 (151-219)||(38246643-38246711)
chr2 (148-219)||(6742299-6742370)
chr2 (152-218)||(29871248-29871314)
chr2 (186-219)||(5954412-5954445)
chr2 (148-196)||(1763714-1763762)
chr2 (151-219)||(23047975-23048043)
chr2 (187-219)||(34144480-34144512)
chr2 (151-219)||(38021467-38021534)
chr2 (151-219)||(44484548-44484616)
[»] chr8 (12 HSPs)
chr8 (148-219)||(5924921-5924992)
chr8 (148-219)||(5925166-5925237)
chr8 (148-219)||(10344439-10344510)
chr8 (151-219)||(33817268-33817336)
chr8 (153-219)||(37562035-37562101)
chr8 (151-219)||(14228804-14228872)
chr8 (151-219)||(30927823-30927891)
chr8 (151-215)||(39258947-39259011)
chr8 (151-216)||(6656231-6656296)
chr8 (151-216)||(6736633-6736698)
chr8 (151-215)||(19723098-19723162)
chr8 (179-219)||(38844711-38844751)
[»] chr4 (18 HSPs)
chr4 (148-219)||(2193698-2193769)
chr4 (148-219)||(32901440-32901511)
chr4 (159-219)||(25936351-25936411)
chr4 (151-219)||(31221524-31221592)
chr4 (153-219)||(41495124-41495190)
chr4 (151-219)||(24019863-24019931)
chr4 (148-219)||(19720530-19720601)
chr4 (148-219)||(20056493-20056564)
chr4 (148-219)||(32365556-32365627)
chr4 (148-219)||(34259937-34260008)
chr4 (148-218)||(13182443-13182513)
chr4 (148-217)||(15638243-15638312)
chr4 (146-219)||(52669496-52669569)
chr4 (151-219)||(5208219-5208287)
chr4 (151-219)||(27001301-27001369)
chr4 (151-219)||(47106022-47106090)
chr4 (155-219)||(53384238-53384301)
chr4 (151-215)||(53662334-53662398)
[»] chr1 (14 HSPs)
chr1 (148-219)||(9011756-9011827)
chr1 (148-219)||(42843233-42843304)
chr1 (148-218)||(50777312-50777382)
chr1 (148-217)||(51193022-51193091)
chr1 (151-219)||(26501406-26501474)
chr1 (148-219)||(3291314-3291385)
chr1 (148-219)||(38627333-38627404)
chr1 (153-215)||(3100557-3100619)
chr1 (153-219)||(7078394-7078460)
chr1 (153-219)||(25130814-25130880)
chr1 (151-219)||(6829677-6829745)
chr1 (148-219)||(25586556-25586627)
chr1 (148-219)||(33660156-33660226)
chr1 (153-219)||(11097778-11097844)
[»] scaffold0522 (1 HSPs)
scaffold0522 (151-219)||(2396-2464)
[»] scaffold0193 (1 HSPs)
scaffold0193 (154-218)||(24785-24849)
[»] chr5 (13 HSPs)
chr5 (151-219)||(16143608-16143676)
chr5 (148-219)||(17489459-17489530)
chr5 (151-219)||(12512904-12512972)
chr5 (151-219)||(38010983-38011051)
chr5 (148-219)||(22203818-22203889)
chr5 (151-219)||(3263400-3263468)
chr5 (151-219)||(9594589-9594657)
chr5 (187-219)||(9596742-9596774)
chr5 (151-219)||(15622155-15622223)
chr5 (151-219)||(19271970-19272038)
chr5 (151-219)||(25345449-25345517)
chr5 (151-219)||(30574269-30574337)
chr5 (151-219)||(33823586-33823654)
[»] chr6 (12 HSPs)
chr6 (153-219)||(33491849-33491915)
chr6 (151-219)||(3339391-3339459)
chr6 (148-219)||(1803980-1804051)
chr6 (151-218)||(29376608-29376675)
chr6 (160-218)||(6435148-6435206)
chr6 (169-218)||(4923058-4923107)
chr6 (146-219)||(17902579-17902652)
chr6 (151-219)||(237290-237358)
chr6 (187-219)||(2056894-2056926)
chr6 (151-219)||(2862183-2862251)
chr6 (151-219)||(2881444-2881512)
chr6 (187-219)||(11017493-11017525)
[»] scaffold0085 (1 HSPs)
scaffold0085 (151-219)||(31192-31260)
[»] scaffold0514 (1 HSPs)
scaffold0514 (151-219)||(1388-1456)
[»] scaffold0172 (1 HSPs)
scaffold0172 (151-219)||(17086-17154)
[»] scaffold0002 (1 HSPs)
scaffold0002 (151-219)||(147148-147216)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 305 - 440
Target Start/End: Complemental strand, 43940531 - 43940397
Alignment:
Q  305 ttgtaaaagtctacaaagatcacttaaaactggcatcctttctcaaccacaaaaaatagatattatcagttgggaatcaaaaacaaatttggtaaaatca 404  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43940531 ttgtaaaagtctacaaagatcacttaaa-ctggcatcctttctcaaccacaaaaaatagatattatcagttgggaataaaaaacaaatttggtaaaatca 43940433  T
Q  405 agttccgtactgcatctaactttgtacacacgtctt 440  Q
    |||||||||||||||||||| |||| ||||||||||    
T  43940432 agttccgtactgcatctaacgttgtgcacacgtctt 43940397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 43940613 - 43940532
Alignment:
Q  58 gaaatgttacacgagcaatgtggaagatagctatagttgataataggtcgttttttcatattttacttgtttgtgacactaa 139  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43940613 gaaatgtgacacgaacaatgtggaagatagctatagttgataatatgtcgttttttcatattttacttgtttgtgacactaa 43940532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 25614710 - 25614780
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    ||||||||||| |||||||||| ||||||| ||||||  |||||| ||||||| |||||||||||||||||    
T  25614710 agtaatgatatttgtacatctaattgatgacaattttggtgacaaccttgtttttctctcttcttattggt 25614780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 43255456 - 43255523
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttatt 215  Q
    ||||||||||| |||||||||| ||||||||||||||  ||||||||||  || ||||||||||||||    
T  43255456 agtaatgatatttgtacatctaattgatgataattttggtgacaatcttacttttctctcttcttatt 43255523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 37149364 - 37149434
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    |||| |||||||||||||||||||| | || || ||||||||||| ||||||| ||| |||||||||||||    
T  37149364 agtagtgatatatgtacatctatttcaagacaacttttatgacaaccttgtttttctttcttcttattggt 37149434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 33050362 - 33050294
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  |||||| ||||||||||||||||||||||||||    
T  33050362 aatgatatttgtacatccatttcatgacaactttagtgacaaccttgtttctctctcttcttattggtc 33050294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 48057390 - 48057457
Alignment:
Q  152 atgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||| |||||||||||||||||| |  |||  ||||||| |||||| ||||||||||||||||||    
T  48057390 atgatatttgtacatctatttgatgacatctttagtgacaattttgtttttctctcttcttattggtc 48057457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 32316008 - 32315937
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||| || ||| |||||||| || || |||| ||||||  |||||| ||||||||||||||||||    
T  32316008 agtaatgatatttgaacaactatttgacgacaacttttgtgacaacattgtttttctctcttcttattggtc 32315937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 42431905 - 42431834
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  42431905 agtaatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 42431834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 48087003 - 48086970
Alignment:
Q  186 atgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||||||||||||| ||||||||||||    
T  48087003 atgacaatcttgtttctctcttttcttattggtc 48086970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 8235624 - 8235676
Alignment:
Q  163 acatctatttgatgataatttttatgacaatcttgtttctctctcttcttatt 215  Q
    |||||||||| ||||||| ||| ||||||||  ||||| ||||||||||||||    
T  8235624 acatctatttaatgataactttgatgacaattatgtttttctctcttcttatt 8235676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 8742565 - 8742497
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattg 216  Q
    |||| |||||| |||||||| | ||||||| || |||  |||||| ||||||| |||||||||||||||    
T  8742565 agtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattg 8742497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 26041489 - 26041421
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  ||||||  |||||| ||||||||||||||||||    
T  26041489 aatgatatttgtacatccattttatgacaactttagtgacaactttgtttttctctcttcttattggtc 26041421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 27164729 - 27164797
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| ||||||  ||||||  |||||| ||||||||||||||||||    
T  27164729 aatgatatttgtacatccattccatgacaattttagtgacaactttgtttttctctcttcttattggtc 27164797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 44511318 - 44511250
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  ||||||| |||||| ||||| ||||||||||||    
T  44511318 aatgatatttgtacatccattttatgacaactttagtgacaattttgtttttctcttttcttattggtc 44511250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 30633700 - 30633774
Alignment:
Q  145 aaaagtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||| |||||||| ||||||||||||| ||||||| ||| ||||||| ||| ||| ||||||||||||||||||    
T  30633700 aaaagcaatgatatttgtacatctattttatgataactttaatgacaaccttatttttctctcttcttattggtc 30633774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 11327287 - 11327219
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  |||||| ||||||||||||||||||||||||||    
T  11327287 aatgatatttgtacatccatttcatgacaactttagtgacaaccttgtttctctctcttcttattggtc 11327219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 50652570 - 50652499
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| ||||||| || ||||||| |||||| |||||||| ||| || ||||||||||||||||||    
T  50652570 agtagtgatatttgtacatttaattgatgacaattttgatgacaattttgcttttctctcttcttattggtc 50652499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 44855435 - 44855363
Alignment:
Q  146 aaagtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    |||| |||||||| |||||||| |||| |||| || |||  |||||||||| ||| |||||||||||||||||    
T  44855435 aaagcaatgatatttgtacatcaatttcatgacaactttagtgacaatcttatttttctctcttcttattggt 44855363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 50279979 - 50280043
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttatt 215  Q
    |||||||| |||||||| |||| |||| || ||| ||||||| ||||||| ||||||||||||||    
T  50279979 aatgatatttgtacatccatttcatgacaactttaatgacaaccttgtttttctctcttcttatt 50280043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 52453984 - 52454052
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  ||||||  |||||||||||||||||||||||||    
T  52453984 aatgatatttgtacatccatttcatgacaactttagtgacaactttgtttctctctcttcttattggtc 52454052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 9582051 - 9582118
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    |||||||| ||||||| ||||| |||| |||||| ||||||| ||| ||| || ||||||||||||||    
T  9582051 aatgatatgtgtacatatatttcatgacaattttgatgacaaccttatttttcactcttcttattggt 9582118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 54233390 - 54233461
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||| | ||||||| || |||  |||||| ||||||| ||||||||||||||||||    
T  54233390 agtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattggtc 54233461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 13159840 - 13159772
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  13159840 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 13159772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 20714422 - 20714354
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||||||||||  |||||| ||| ||| ||| ||||||||||||||    
T  20714422 aatgatatttgtacatccattccatgataattttagtgacaaccttatttttctatcttcttattggtc 20714354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 30400084 - 30400116
Alignment:
Q  187 tgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||||||||| ||||||||||||||||||    
T  30400084 tgacaatcttgtttttctctcttcttattggtc 30400116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 36819135 - 36819067
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  36819135 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 36819067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 3299008 - 3299064
Alignment:
Q  162 tacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    ||||||||||| |||||||||||  |||||||||| |||||||||||||||||||||    
T  3299008 tacatctatttaatgataattttggtgacaatcttatttctctctcttcttattggt 3299064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 17826233 - 17826162
Alignment:
Q  144 aaaaagtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttatt 215  Q
    |||||||| |||||||||||||||||||| | || || ||| ||||||| ||||||| ||||||||||||||    
T  17826233 aaaaagtagtgatatatgtacatctattttaagacaactttcatgacaaccttgtttttctctcttcttatt 17826162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 42141499 - 42141567
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattg 216  Q
    ||||||||||| || |||||||||||||||||| |||  |||||| ||||||| ||||| |||||||||    
T  42141499 agtaatgatatttggacatctatttgatgataactttgttgacaaccttgtttttctctattcttattg 42141567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 5962820 - 5962749
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||||| ||||||||||||||  ||| ||  |||||| ||||||||||||||||||    
T  5962820 agtagtgatatttgtacatctaattgatgataattttggtgataactttgtttttctctcttcttattggtc 5962749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 22353067 - 22353135
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||||||||||  ||| || ||||| | ||||||||||||||||||    
T  22353067 aatgatatttgtacatccatttaatgataattttggtgataaccttgtatttctctcttcttattggtc 22353135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 37966535 - 37966467
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  37966535 aatgatatttgtacatccatttcatgacaactttagtgacaaccttgtttttctctcttcttattggtc 37966467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 38246643 - 38246711
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||||||||||||||||||||||    
T  38246643 aatgatatttgtacatcaattccatgacaactttagtgacaaccttgtttctctctcttcttattggtc 38246711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 6742299 - 6742370
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||  ||||||   ||||| ||| || |||| |||||||||| ||||||||||||||||||||||    
T  6742299 agtaatgataattgtacaatcatttgttgacaacttttgtgacaatcttctttctctctcttcttattggtc 6742370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 29871248 - 29871314
Alignment:
Q  152 atgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    ||||||| ||| ||||||||| |||| || |||  ||||||  ||||||||||||||||||||||||    
T  29871248 atgatatttgtccatctatttcatgacaactttggtgacaactttgtttctctctcttcttattggt 29871314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 5954412 - 5954445
Alignment:
Q  186 atgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||||||||||||||||||||    
T  5954412 atgacaattttgtttctctctcttcttattggtc 5954445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 1763762 - 1763714
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatctt 196  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||    
T  1763762 agtaatgatatttgtataactatttgatgacaatttttgtgacaatctt 1763714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 23047975 - 23048043
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  23047975 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 23048043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 34144480 - 34144512
Alignment:
Q  187 tgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||||||||| ||||||||||||||||||    
T  34144480 tgacaatcttgtttttctctcttcttattggtc 34144512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 38021534 - 38021467
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| ||||||| |||  ||||||| ||||||||||||||| | |||||||    
T  38021534 aatgatatttgtacatc-atttaatgataactttggtgacaattttgtttctctctcttttgattggtc 38021467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 44484548 - 44484616
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  ||||||  |||||| ||||||||||||||||||    
T  44484548 aatgatatttgtacatcaattttatgacaactttagtgacaactttgtttttctctcttcttattggtc 44484616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 5924992 - 5924921
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| ||||||||||||||| ||||||||| || ||| ||||||| ||| ||| ||||||||||||||||||    
T  5924992 agtagtgatatatgtacatccatttgatgacaactttcatgacaaccttatttttctctcttcttattggtc 5924921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 5925237 - 5925166
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| ||||||||||||||| ||||||||| || ||||||||||| ||| ||| ||||| ||||||||||||    
T  5925237 agtagtgatatatgtacatccatttgatgacaacttttatgacaaccttatttttctctattcttattggtc 5925166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 10344510 - 10344439
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| ||||||||||||||||||||||| | || ||||||||||| ||||||| ||| |||| |||||||||    
T  10344510 agtagtgatatatgtacatctatttgataacaacttttatgacaaccttgtttttctttctttttattggtc 10344439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 33817336 - 33817268
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| ||||||||||||| || | ||||||  |||||||||||||| |||||||| |||||||||    
T  33817336 aatgatatttgtacatctatttcataacaattttagtgacaatcttgtttttctctctttttattggtc 33817268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 37562035 - 37562101
Alignment:
Q  153 tgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||| |||||||| | ||||||| || ||| ||||||| ||||||| ||||||||||||||||||    
T  37562035 tgatatttgtacatccaattgatgacaactttgatgacaaccttgtttttctctcttcttattggtc 37562101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 14228872 - 14228804
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||||||||| |||| |||||||||||  ||||||| || ||| ||||| || |||||||||    
T  14228872 aatgatatatgtacatccatttcatgataattttagtgacaattttatttttctctttttttattggtc 14228804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 30927823 - 30927891
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  30927823 aatgatatttgtacatccatttcatgacaactttagtgacaaccttgtttttctctcttcttattggtc 30927891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 39258947 - 39259011
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttatt 215  Q
    |||||||| |||||||| |||  |||| |||||| |||| |||||||||| ||||||||||||||    
T  39258947 aatgatatttgtacatccattccatgacaattttaatgataatcttgtttttctctcttcttatt 39259011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 6656231 - 6656296
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattg 216  Q
    |||| ||| |||||||| |||  |||||||||||  |||||| ||||||| |||||||||||||||    
T  6656231 aatggtatttgtacatccattccatgataattttagtgacaaccttgtttttctctcttcttattg 6656296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 6736633 - 6736698
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattg 216  Q
    |||| ||| |||||||| |||  |||||||||||  |||||| ||||||| |||||||||||||||    
T  6736633 aatggtatttgtacatccattccatgataattttagtgacaaccttgtttttctctcttcttattg 6736698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 19723098 - 19723162
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttatt 215  Q
    |||||||| ||||||||||| | |||| || |||  |||||| ||||||| ||||||||||||||    
T  19723098 aatgatatttgtacatctatatcatgacaactttagtgacaaccttgtttttctctcttcttatt 19723162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 38844711 - 38844751
Alignment:
Q  179 aatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||||||||| ||  ||||||||||||||||||||||    
T  38844711 aatttttatgacaacctcttttctctctcttcttattggtc 38844751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 2193698 - 2193769
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||| | ||||||| || ||| ||||||||||||||| ||||||||||||||||||    
T  2193698 agtagtgatatttgtacatccaattgatgacaactttgatgacaatcttgtttttctctcttcttattggtc 2193769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 32901511 - 32901440
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||| | ||||||||||||||  |||||||||||||| |||||||| |||||||||    
T  32901511 agtagtgatatttgtacatccaattgatgataattttggtgacaatcttgtttttctctctttttattggtc 32901440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 25936411 - 25936351
Alignment:
Q  159 atgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||||| |||| |||||||||||||| ||||| ||||||||||||    
T  25936411 atgtgcatctaattgatgataacttttgtgacaatcttgtttttctcttttcttattggtc 25936351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 31221592 - 31221524
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| ||||||  |||||||||||||| ||||||||||||||||||    
T  31221592 aatgatatttgtacatcaattccatgacaattttagtgacaatcttgtttttctctcttcttattggtc 31221524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 41495190 - 41495124
Alignment:
Q  153 tgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||| |||| ||||| ||||||||||||||  ||||||  |||||| ||||||||||||||||||    
T  41495190 tgatatttgtatatctaattgatgataattttggtgacaactttgtttttctctcttcttattggtc 41495124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 24019863 - 24019931
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| ||||||||||||| |||| || |||  |||||| |||||||||||||||| | |||||||    
T  24019863 aatgatatttgtacatctatttaatgacaactttggtgacaaccttgtttctctctcttttgattggtc 24019931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 19720530 - 19720601
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| ||||||||||||||| |||||| || || ||| ||||||| ||||||||||||| || | |||||||    
T  19720530 agtagtgatatatgtacatccatttgaagacaactttgatgacaaccttgtttctctcttttataattggtc 19720601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 20056564 - 20056493
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||| | ||||||| || |||  ||||||||||| || ||||||||||||||||||    
T  20056564 agtagtgatatttgtacatccaattgatgacaactttggtgacaatcttgcttttctctcttcttattggtc 20056493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 32365556 - 32365627
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||||||||||||||||| ||||||| ||| |||| ||  || ||| |||||||| |||||||||    
T  32365556 agtagtgatatatgtacatctattttatgataactttgatgataacattatttttctctctttttattggtc 32365627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 34260008 - 34259937
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||| |||||| | ||||| ||| || |||| |||||| ||| ||| ||||||||||||||||||    
T  34260008 agtaatgatatttgtacaaccatttggtgacaacttttgtgacaaacttctttttctctcttcttattggtc 34259937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 13182513 - 13182443
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    ||||||||||| |||||||| | ||||||| || ||| |||| |||||||||| ||||| || ||||||||    
T  13182513 agtaatgatatttgtacatcaaattgatgacaactttgatgataatcttgtttttctctttttttattggt 13182443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 15638312 - 15638243
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattgg 217  Q
    |||| |||||| |||||||| | ||||||| || |||  |||||| ||||||| ||||||||||||||||    
T  15638312 agtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattgg 15638243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 52669496 - 52669569
Alignment:
Q  146 aaagtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||||| |||||||| |||| ||||  | |||  |||||||||||||| |||||||| |||||||||    
T  52669496 aaagcaatgatatttgtacatccattttatgaccactttagtgacaatcttgtttttctctctttttattggtc 52669569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 5208219 - 5208287
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  5208219 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 5208287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 27001301 - 27001369
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  27001301 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 27001369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 47106090 - 47106022
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  47106090 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 47106022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 53384238 - 53384301
Alignment:
Q  155 atatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||||| |||| ||||||| |||  ||||||| |||||| ||||||||||||||||||    
T  53384238 atatttgtacatccattttatgataactttagtgacaat-ttgtttttctctcttcttattggtc 53384301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 53662334 - 53662398
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttatt 215  Q
    ||||||||||||||||| |||| |||| || |||  ||| ||| |||||| ||||||||||||||    
T  53662334 aatgatatatgtacatccatttcatgacaactttagtgataattttgtttttctctcttcttatt 53662398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 9011827 - 9011756
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||| |||||||| |||| |||| ||| ||  |||||||||||||| ||||||||||||||||||    
T  9011827 agtaatgatatttgtacatccatttcatgacaatgttagtgacaatcttgtttttctctcttcttattggtc 9011756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 42843233 - 42843304
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||| | ||||||||||||||  |||||| ||||||| ||||||||||||||||||    
T  42843233 agtagtgatatttgtacatccaattgatgataattttggtgacaaccttgtttttctctcttcttattggtc 42843304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 50777312 - 50777382
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    ||||||||||| |||||||| | ||||||| ||||||  |||||| ||||||| |||||||||||||||||    
T  50777312 agtaatgatatttgtacatccaattgatgacaattttggtgacaaccttgtttttctctcttcttattggt 50777382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 51193022 - 51193091
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattgg 217  Q
    |||| ||||||||||||||| ||||||||| || ||| |||||||  |||||| ||||||||||||||||    
T  51193022 agtagtgatatatgtacatccatttgatgacaactttcatgacaacattgtttttctctcttcttattgg 51193091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 26501474 - 26501406
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| ||||||||||||  |||| || ||| ||||||| ||||||| ||||||||||||||||||    
T  26501474 aatgatatttgtacatctattacatgacaactttaatgacaaccttgtttttctctcttcttattggtc 26501406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 3291314 - 3291385
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||| |||||||| |||  |||| |||||| |||| || ||||||||||||||||||| ||||||    
T  3291314 agtaatgatatttgtacatccattccatgacaattttaatgataaccttgtttctctctcttctttttggtc 3291385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 38627333 - 38627404
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||| |||||||||||||  |||||| ||||| |||||| || ||| || |||||||||||||||    
T  38627333 agtaatgatatttgtacatctattttgtgataacttttaagacaatattatttttccctcttcttattggtc 38627404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 3100619 - 3100557
Alignment:
Q  153 tgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttatt 215  Q
    ||||| |||||||| ||| | | ||||| ||||||||||||||||||| ||||||||||||||    
T  3100619 tgatacatgtacatatatcttaagataacttttatgacaatcttgtttttctctcttcttatt 3100557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 7078394 - 7078460
Alignment:
Q  153 tgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||||||| |||||| || || ||| ||||||| ||||||||||||| |||| |||||||    
T  7078394 tgatatatgtacatccatttgaagacaactttgatgacaaccttgtttctctcttttctaattggtc 7078460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 25130880 - 25130814
Alignment:
Q  153 tgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||| ||||||||||||| |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  25130880 tgatatttgtacatctatttcatgacaactttagtgacaaccttgtttttctctcttcttattggtc 25130814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 6829677 - 6829745
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||||||||||| ||||||||||||||||||    
T  6829677 aatgatatttgtacatccattccatgacaactttagtgacaatcttgtttttctctcttcttattggtc 6829745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 25586556 - 25586627
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||| ||||||   ||||||||||||||||| |||||| | | |||  |||||||||||||||||    
T  25586556 agtaatgatatttgtacaatcatttgatgataatttttttgacaaccgttttttcctctcttcttattggtc 25586627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 33660226 - 33660156
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| ||||||||||||||| ||||||||| || ||| ||||||| ||||||| | | ||||||||||||||    
T  33660226 agtagtgatatatgtacatccatttgatgacaactttcatgacaaccttgttt-tttatcttcttattggtc 33660156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 11097778 - 11097844
Alignment:
Q  153 tgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||||||| |||||| || || ||| ||||||| ||| ||||||||| |||| |||||||    
T  11097778 tgatatatgtacatccatttgaagacaactttgatgacaaacttttttctctcttttctaattggtc 11097844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 2396 - 2464
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| | ||||||||||||||  ||||||||||| || |||||||| |||||||||    
T  2396 aatgatatttgtacatccaattgatgataattttggtgacaatcttgattttctctctttttattggtc 2464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 24849 - 24785
Alignment:
Q  154 gatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    ||||| ||||||||||||| |||||||||||  |||||| ||| ||| |||||||||||||||||    
T  24849 gatatttgtacatctatttcatgataattttagtgacaaccttatttttctctcttcttattggt 24785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 16143676 - 16143608
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||||||||||||||||| |||| || ||| ||||||||| ||| | |||||| |||||||||||    
T  16143676 aatgatatatgtacatctatttaatgacaactttgatgacaatcatgtgtttctctcatcttattggtc 16143608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 17489530 - 17489459
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||| | ||||||| || |||  |||||||||||||| ||||||||||||||||||    
T  17489530 agtagtgatatttgtacatccaattgatgacaactttggtgacaatcttgtttttctctcttcttattggtc 17489459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 12512972 - 12512904
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||||||||||| ||||||||||||||||||    
T  12512972 aatgatatttgtacatccattccatgacaactttagtgacaatcttgtttttctctcttcttattggtc 12512904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 38011051 - 38010983
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| ||||||||||||  |||| ||||||  ||||||| |||||| | ||||||||||||||||    
T  38011051 aatgatatttgtacatctattccatgacaattttagtgacaattttgtttttttctcttcttattggtc 38010983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 22203889 - 22203818
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||| |||| |||||| | |||||||| |||||||| |||||| |||  || ||||||||||||||||||    
T  22203889 agtaataatatttgtacaaccatttgatggtaatttttgtgacaaccttccttttctctcttcttattggtc 22203818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 3263400 - 3263468
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  3263400 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 3263468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 9594657 - 9594589
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||| ||||||||||||||||||||||    
T  9594657 aatgatatttgtacatccattccatgacaactttagtgacaaccttatttctctctcttcttattggtc 9594589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 9596742 - 9596774
Alignment:
Q  187 tgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||||||||| ||||||||||||||||||    
T  9596742 tgacaatcttgtttttctctcttcttattggtc 9596774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 15622223 - 15622155
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  15622223 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 15622155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 19272038 - 19271970
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| ||||||||||||  |||| ||||||  ||| ||  |||||| ||||||||||||||||||    
T  19272038 aatgatatttgtacatctattatatgacaattttagtgataactttgtttttctctcttcttattggtc 19271970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 25345517 - 25345449
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  || | ||||||  |||||||||| ||| ||||||||||||||||||    
T  25345517 aatgatatttgtacatccattccataacaattttagtgacaatcttatttttctctcttcttattggtc 25345449  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 30574269 - 30574337
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| ||||||  ||||||  |||||| ||||||||||||||||||    
T  30574269 aatgatatttgtacatccattccatgacaattttagtgacaactttgtttttctctcttcttattggtc 30574337  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 33823586 - 33823654
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  33823586 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 33823654  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 33491915 - 33491849
Alignment:
Q  153 tgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    ||||||||||||||| |||||| || || ||| || |||| ||| ||||||||||||||||||||||    
T  33491915 tgatatatgtacatccatttgaagacaactttgattacaaccttatttctctctcttcttattggtc 33491849  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 3339391 - 3339459
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  |||||||||||||| |||||||| |||||||||    
T  3339391 aatgatatttgtacatccatttcatgacaactttagtgacaatcttgtttttctctctttttattggtc 3339459  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 1804051 - 1803980
Alignment:
Q  148 agtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||| |||||||| | ||||||| || |||  |||||| ||||||| ||||||||||||||||||    
T  1804051 agtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattggtc 1803980  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 29376608 - 29376675
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    |||||||| |||||||||||||  ||| |||||| ||||||| | |||||  ||||||||||||||||    
T  29376608 aatgatatttgtacatctatttagtgacaattttgatgacaaccatgttttgctctcttcttattggt 29376675  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 6435206 - 6435148
Alignment:
Q  160 tgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    |||||||| | ||||||| ||||||  |||||| ||||||| |||||||||||||||||    
T  6435206 tgtacatccaattgatgacaattttggtgacaaccttgtttttctctcttcttattggt 6435148  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 4923107 - 4923058
Alignment:
Q  169 atttgatgataatttttatgacaatcttgtttctctctcttcttattggt 218  Q
    ||||||||| || |||||||| ||| |||||| |||||||||||||||||    
T  4923107 atttgatgacaacttttatgataattttgtttttctctcttcttattggt 4923058  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 17902579 - 17902652
Alignment:
Q  146 aaagtaatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||| |||||||| ||||||||||||  |||| || |||  ||| ||| |||||| ||||||||||||||||||    
T  17902579 aaagcaatgatatttgtacatctattccatgacaactttagtgataatattgtttttctctcttcttattggtc 17902652  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 237290 - 237358
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| || |||||||||| |||| || |||| |||||   |||||| ||||||||||||||||||    
T  237290 aatgatatttggacatctatttaatgacaacttttgtgacatctttgtttttctctcttcttattggtc 237358  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 2056926 - 2056894
Alignment:
Q  187 tgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||| ||||||||||||||||||||||||||    
T  2056926 tgacaaccttgtttctctctcttcttattggtc 2056894  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 2862251 - 2862183
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| || ||||| |||| |||| || |||  ||||||| |||||||||||| ||||||||||||    
T  2862251 aatgatatttggacatccatttaatgacaactttggtgacaattttgtttctctcttttcttattggtc 2862183  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 2881512 - 2881444
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| || ||||| |||| |||| || |||  ||||||  |||||||||||||||||||||||||    
T  2881512 aatgatatttggacatccatttaatgacaactttggtgacaactttgtttctctctcttcttattggtc 2881444  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 11017525 - 11017493
Alignment:
Q  187 tgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||| ||||||||||||||||||||||||||    
T  11017525 tgacaaccttgtttctctctcttcttattggtc 11017493  T

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Target: scaffold0085 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 31192 - 31260
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| ||||||||||||  |||||||||||  ||||||  |||||| ||||| ||||||||||||    
T  31192 aatgatatttgtacatctattacatgataattttagtgacaactttgtttttctctgttcttattggtc 31260  T

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Target: scaffold0514 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 1388 - 1456
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| ||||||  ||||||  |||||| ||||||||||||||||||    
T  1388 aatgatatttgtacatccattccatgacaattttagtgacaactttgtttttctctcttcttattggtc 1456  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 17154 - 17086
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||| |||| || |||  ||||||  ||||||||||||||||| |||||||    
T  17154 aatgatatttgtacatccatttaatgacaactttggtgacaactttgtttctctctcttctgattggtc 17086  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 147148 - 147216
Alignment:
Q  151 aatgatatatgtacatctatttgatgataatttttatgacaatcttgtttctctctcttcttattggtc 219  Q
    |||||||| |||||||| |||  |||| || |||  |||||| ||||||| ||||||||||||||||||    
T  147148 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtc 147216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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