View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15833_low_4 (Length: 429)

Name: NF15833_low_4
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15833_low_4
NF15833_low_4
[»] chr1 (19 HSPs)
chr1 (1-410)||(3361819-3362228)
chr1 (79-382)||(2006580-2006883)
chr1 (222-386)||(3340636-3340800)
chr1 (222-367)||(3218258-3218403)
chr1 (269-399)||(3378846-3378976)
chr1 (267-373)||(4334790-4334896)
chr1 (198-378)||(4322831-4323011)
chr1 (281-408)||(3372793-3372920)
chr1 (241-387)||(9818667-9818813)
chr1 (287-387)||(2948271-2948371)
chr1 (267-387)||(6601560-6601680)
chr1 (239-382)||(2019876-2020019)
chr1 (222-319)||(3340853-3340950)
chr1 (267-392)||(6592305-6592430)
chr1 (222-315)||(3341007-3341100)
chr1 (239-319)||(3349577-3349657)
chr1 (239-382)||(2010663-2010806)
chr1 (88-382)||(2012073-2012367)
chr1 (80-180)||(3379072-3379172)
[»] chr4 (1 HSPs)
chr4 (137-382)||(21237664-21237909)
[»] chr2 (5 HSPs)
chr2 (219-379)||(20953124-20953284)
chr2 (222-407)||(20923581-20923766)
chr2 (267-379)||(20927202-20927314)
chr2 (222-388)||(20934577-20934743)
chr2 (266-383)||(39274180-39274297)
[»] chr5 (1 HSPs)
chr5 (328-388)||(17969984-17970044)


Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 3362228 - 3361819
Alignment:
Q  1 aaaatcgaagcaaattgctagagcatccacacaatttaactagatagcatccatagtctaaacacatcgttaactcaactaatcggaaagtgttttcaaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3362228 aaaatcgaagcaaattgctagagcatccacgcaatttaactagattgcatccatagtctaaatacatcgttaactcaactaatcggaaagtgttttcaaa 3362129  T
Q  101 gctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccgtcaaggttaaacaacatcaagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  3362128 gctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccatcaaggttaaacaacatcaatttt 3362029  T
Q  201 tcaagaaaagggctgttggagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacg 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3362028 tcaagaaaagggctgttggagatcatgttttcaaaagaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacg 3361929  T
Q  301 ttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3361928 ttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaat 3361829  T
Q  401 gtgcagcaca 410  Q
    ||||||||||    
T  3361828 gtgcagcaca 3361819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 382
Target Start/End: Complemental strand, 2006883 - 2006580
Alignment:
Q  79 ctaatcggaaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccgtc 178  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||| |||||    |||||| ||||||||| |||| || || |||||| ||||||| ||    
T  2006883 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatc 2006784  T
Q  179 aaggttaaacaacatcaagttttcaagaaaagggctgttggagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttc 278  Q
    ||| |    |||  |||| |||||||| | |||||   | || ||||  || ||||| | ||  |||| |||  |||| |||  ||| |||||||||||     
T  2006783 aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagacttttt 2006684  T
Q  279 aagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatct 378  Q
    |||||||| |||||||||| ||| | ||||||||||||| ||||  | | ||||  || ||||||||||||||||||||| |||||||||||||| ||||    
T  2006683 aagttcttcaagccttcaatcgtcgatggaggtttaagcaaacaataatataatgttagatgatgtaaactttgacaagaaaataagcaccaaggtatct 2006584  T
Q  379 tata 382  Q
    ||||    
T  2006583 tata 2006580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 386
Target Start/End: Complemental strand, 3340800 - 3340636
Alignment:
Q  222 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 321  Q
    |||||||||||||| | |||||||||||||||||| | |  |||   |||||||||||| |||  ||||||||||||||| |||||||| ||||| ||||    
T  3340800 atcatgttttcaaaagcatcttgagtcattgtaacttcaaacaaagaaagacttttcaaattccggaagccttcaaacgtcgttggaggattaaggcaac 3340701  T
Q  322 agcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgt 386  Q
    |  | || | ||||||||| || ||||||||||||||||||||||| ||||| || |||||||||    
T  3340700 aataattcagttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgt 3340636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 367
Target Start/End: Original strand, 3218258 - 3218403
Alignment:
Q  222 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 321  Q
    |||| ||||||||| | |||||||| ||||||||| |||   | ||||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||    
T  3218258 atcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttgttggaggttgaatacaac 3218357  T
Q  322 agcattttaattctaaatgatgtaaactttgacaagagaataagca 367  Q
    | || | ||||| |||||  |||||||||||||| ||||| |||||    
T  3218358 aacagtctaattttaaattctgtaaactttgacatgagaacaagca 3218403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 399
Target Start/End: Complemental strand, 3378976 - 3378846
Alignment:
Q  269 aagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcac 368  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||| | ||| || | |||   ||||||| ||||||||||||||||||||||||||    
T  3378976 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacaacaatataagcttaaatgacgtaaactttgacaagagaataagcac 3378877  T
Q  369 caagggatcttatagcgttcgtctaaccaaa 399  Q
    || |  |||||||| | ||| |||| |||||    
T  3378876 catgttatcttataacattcctctatccaaa 3378846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 4334790 - 4334896
Alignment:
Q  267 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 366  Q
    |||||||||||||||||  | |||||||||||| | ||||||||||||||| |||| |  ||||||| ||||  ||||||||||||||| |||||||| |    
T  4334790 tcaagacttttcaagtttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaactttgacatgagaataaac 4334889  T
Q  367 accaagg 373  Q
    |||||||    
T  4334890 accaagg 4334896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 378
Target Start/End: Original strand, 4322831 - 4323011
Alignment:
Q  198 ttttcaagaaaagggctgttggagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaa 297  Q
    |||||||| || ||||  ||||| |||||||||||||| | |||||||  || ||||||  || | |  |||||||||||||||||  |||||| |||||    
T  4322831 ttttcaagcaaggggcatttggatatcatgttttcaaaagcatcttgatccactgtaaccagatttagatcaagacttttcaagtttctgaagctttcaa 4322930  T
Q  298 acgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatct 378  Q
    ||    | ||||||||||||||||| ||| |||||| ||| |  |||||||||||||| |||||||| |||||||| ||||    
T  4322931 acaccatcggaggtttaagccaacaccatcttaattttaagttgtgtaaactttgacatgagaataaacaccaaggtatct 4323011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 408
Target Start/End: Complemental strand, 3372920 - 3372793
Alignment:
Q  281 gttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatctta 380  Q
    ||||||||| |||||||||||||||||| |||||||   ||| ||   |||   ||||||| |||||||||||||||||||||| | | |||| ||||||    
T  3372920 gttcttgaaaccttcaaacgttgttggaagtttaagttgacaacaagataagcttaaatgacgtaaactttgacaagagaataaactcaaaggtatctta 3372821  T
Q  381 tagcgttcgtctaaccaaatgtgcagca 408  Q
    || |||| ||||||||||| ||||||||    
T  3372820 taacgtttgtctaaccaaaagtgcagca 3372793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 387
Target Start/End: Original strand, 9818667 - 9818813
Alignment:
Q  241 cttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatg 340  Q
    ||||||||||||||||  || |||| | ||||||||||   |||   |||||||||||| ||||||||||||||||||||||  | || |  ||||||||    
T  9818667 cttgagtcattgtaacccgattcaaataaagacttttctgattccgaaagccttcaaacattgttggaggtttaagccaacaataattaagatctaaatg 9818766  T
Q  341 atgtaaactttgacaagagaataagcaccaagggatcttatagcgtt 387  Q
    |||||||| ||| || ||||||||| |  |||| |||||||||||||    
T  9818767 atgtaaaccttggcaggagaataaggatgaaggtatcttatagcgtt 9818813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 387
Target Start/End: Original strand, 2948271 - 2948371
Alignment:
Q  287 gaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgt 386  Q
    ||||||||||||| ||||||||||||||||||||||  | || |  |||||||||||||||| ||| || ||||||||| |  |||| ||||||||||||    
T  2948271 gaagccttcaaactttgttggaggtttaagccaacaataattcagatctaaatgatgtaaaccttggcaggagaataaggatgaaggtatcttatagcgt 2948370  T
Q  387 t 387  Q
    |    
T  2948371 t 2948371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 387
Target Start/End: Original strand, 6601560 - 6601680
Alignment:
Q  267 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 366  Q
    |||||||| ||||||||| |||| |||| ||| |||| ||| ||| |||||||||||     |||||||||||||||||||| ||||||||| |||||||    
T  6601560 tcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagc 6601659  T
Q  367 accaagggatcttatagcgtt 387  Q
    |  |||| || ||||||||||    
T  6601660 atgaaggtattttatagcgtt 6601680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 382
Target Start/End: Complemental strand, 2020019 - 2019876
Alignment:
Q  239 atcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaa 338  Q
    |||||||| ||| |||| ||||  ||| | |||||||||||||||||| |||||||||| ||| | ||||||||||||| ||||  |   |||   || |    
T  2020019 atcttgagacatagtaatgtgatccaacttaagacttttcaagttcttaaagccttcaatcgtcgatggaggtttaagcaaacaataagataaacttaga 2019920  T
Q  339 tgatgtaaactttgacaagagaataagcaccaagggatcttata 382  Q
    ||| |||| ||||||||||| |||||||||||||| ||||||||    
T  2019919 tgaagtaagctttgacaagaaaataagcaccaaggtatcttata 2019876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 319
Target Start/End: Complemental strand, 3340950 - 3340853
Alignment:
Q  222 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagcca 319  Q
    |||||||||||||| | ||||||||||||| |||| | |  |||   |||||||||||| |||  |||||||||||| ||||||||||||||||||||    
T  3340950 atcatgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagccttcaaatgttgttggaggtttaagcca 3340853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 392
Target Start/End: Original strand, 6592305 - 6592430
Alignment:
Q  267 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 366  Q
    |||||||| |||||||||||||| |||| ||| |||| ||| ||| ||||||| ||   |  ||||||||||||||| |||||||||||||| ||||| |    
T  6592305 tcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataacc 6592404  T
Q  367 accaagggatcttatagcgttcgtct 392  Q
    |  |||| || |||||||||| ||||    
T  6592405 atgaaggtattttatagcgttggtct 6592430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 315
Target Start/End: Complemental strand, 3341100 - 3341007
Alignment:
Q  222 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaa 315  Q
    |||||||||||||| | ||||||||||||| |||||  |  |||   |||||||||||| |||  |||||||||||| ||||||||||||||||    
T  3341100 atcatgttttcaaatgcatcttgagtcattctaacgacagacaaagaaagacttttcaaattccggaagccttcaaatgttgttggaggtttaa 3341007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 3349657 - 3349577
Alignment:
Q  239 atcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagcca 319  Q
    ||||||||||||||||||  || |||| | |||||||||||  |||  ||||||||||||  |||||||||||||||||||    
T  3349657 atcttgagtcattgtaacccgattcaaataaagacttttcagattccggaagccttcaaaaattgttggaggtttaagcca 3349577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 382
Target Start/End: Complemental strand, 2010806 - 2010663
Alignment:
Q  239 atcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaa 338  Q
    |||||||| ||| |||| ||||  ||| |||||||||||||||||||| |||||| |||  || | ||||||||||||| |||   |   |||   || |    
T  2010806 atcttgagacatagtaaagtgatccaactcaagacttttcaagttcttaaagcctacaattgtcgatggaggtttaagcaaaccataagataaacttaga 2010707  T
Q  339 tgatgtaaactttgacaagagaataagcaccaagggatcttata 382  Q
    ||| |||| ||||||||||| |||||||||||||| ||||||||    
T  2010706 tgaagtaagctttgacaagaaaataagcaccaaggtatcttata 2010663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 382
Target Start/End: Complemental strand, 2012367 - 2012073
Alignment:
Q  88 aagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccgtcaaggttaaa 187  Q
    |||||||||||||||||||||||||||||| ||||   |||     | | || ||||||||| |||| || || |||||| ||||||||||||  |        
T  2012367 aagtgttttcaaagctaatatcctcaaatttaccaacaatacctagaccgttgagatttggtgcgtgaatgtttatttgggtgaaaccgtcaaattctgc 2012268  T
Q  188 caacatcaagttttcaagaaaagggctgttggagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttg 287  Q
    ||||||||| |||||||| | |||||   | || ||||   | ||||| | ||||||||  || ||||| | |   || | ||||||||||||||||||     
T  2012267 caacatcaatttttcaagcagagggcaactagatatcaaactctcaaaagcatcttgagaaatagtaactttaactaaataaagacttttcaagttcttc 2012168  T
Q  288 aagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttata 382  Q
    |||||||||| | | | ||||||||||||| ||||  |   ||||  || || |||||| ||||||||||| |||||||||||||| ||||||||    
T  2012167 aagccttcaatcatcgatggaggtttaagcaaacaagaaaataatgttagataatgtaagctttgacaagaaaataagcaccaaggtatcttata 2012073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 3379172 - 3379072
Alignment:
Q  80 taatcggaaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccgtca 179  Q
    |||| ||||| ||||| ||||| ||||||||||||||| |||||  || | |  |||||||||||||||| ||||   |||||||||  ||||||| |||    
T  3379172 taattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatca 3379073  T
Q  180 a 180  Q
    |    
T  3379072 a 3379072  T

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Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 137 - 382
Target Start/End: Complemental strand, 21237909 - 21237664
Alignment:
Q  137 cttcagatttggtccgtggatattaatttggctgaaaccgtcaaggttaaacaacatcaagttttcaagaaaagggctgttggagatcatgttttcaaac 236  Q
    ||||||||| |||  |||||||||||||||| ||||||| | ||| ||||  ||   |||  ||||||| |||||||  ||| | |||| |||||| ||     
T  21237909 cttcagattgggtgtgtggatattaatttgggtgaaaccatgaagattaactaattccaatgtttcaagcaaagggcacttgaatatcaagttttcgaaa 21237810  T
Q  237 gaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattcta 336  Q
    | |||||||||||||||||| |   ||||   |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||    
T  21237809 gcatcttgagtcattgtaacttcgatcaaagaaagactttccaagttcctgaagccttcaaacgttgttggaggtttaagccaacaacttgttaattcta 21237710  T
Q  337 aatgatgtaaactttgacaagagaataagcaccaagggatcttata 382  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  21237709 aatgatgtaaactttgacaagagaataagcaccaaggtatcttata 21237664  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 219 - 379
Target Start/End: Complemental strand, 20953284 - 20953124
Alignment:
Q  219 gagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagcc 318  Q
    ||||||| ||||||||| | |||||||| || ||| ||  || |||  |||||||| |||||  |||| |||||||||||||| |||||||||||||| |    
T  20953284 gagatcaagttttcaaaagcatcttgagccactgttactagattcagatcaagactcttcaacctcttaaagccttcaaacgtcgttggaggtttaagac 20953185  T
Q  319 aacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatctt 379  Q
    |||| || | |||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  20953184 aacaccaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20953124  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 222 - 407
Target Start/End: Complemental strand, 20923766 - 20923581
Alignment:
Q  222 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 321  Q
    |||| ||||||||| | ||||| || || |||||| ||   ||||| |||||||||||||||| |||||||||||||| | | ||||||||||||| ||     
T  20923766 atcaagttttcaaaagcatctttagccactgtaacttgttccaattgaagacttttcaagttcatgaagccttcaaacatcgctggaggtttaagcgaag 20923667  T
Q  322 agcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagc 407  Q
    | ||    || | ||||||||||||||||||||||||||||||||||||||| || ||||||||||  || |||||||||| ||||    
T  20923666 aacaaaacaaatttaaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttgctcgaaccaaatgtccagc 20923581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 267 - 379
Target Start/End: Complemental strand, 20927314 - 20927202
Alignment:
Q  267 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 366  Q
    |||||||| |||||  |||| |||| ||||||||| |||||||||||||| ||||| || | ||||| ||||||||||||||||||||||||||||||||    
T  20927314 tcaagactcttcaaactcttaaagctttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagc 20927215  T
Q  367 accaagggatctt 379  Q
    ||||||| |||||    
T  20927214 accaaggtatctt 20927202  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 388
Target Start/End: Complemental strand, 20934743 - 20934577
Alignment:
Q  222 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 321  Q
    |||| ||||||||| | |||||||| || ||  || ||| |||  ||||||||||||||| || | ||||||| ||||   |||||||||||||| ||||    
T  20934743 atcaagttttcaaaagcatcttgagccactgctacatgattcagatcaagacttttcaagctcctaaagcctttaaacaacgttggaggtttaagacaac 20934644  T
Q  322 agcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttc 388  Q
    || | | |||||  |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  20934643 agaaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagagttc 20934577  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 383
Target Start/End: Complemental strand, 39274297 - 39274180
Alignment:
Q  266 ttcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataag 365  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||    || | |||| | || ||||||||||| |||||||||    
T  39274297 ttcaagtcttttcaagttcctgaagccttcaaatgttgttggaggtttaagccaacaacaagccaactttaaacgttgcaaactttgacaggagaataag 39274198  T
Q  366 caccaagggatcttatag 383  Q
    |||||||| |||||||||    
T  39274197 caccaaggtatcttatag 39274180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 17970044 - 17969984
Alignment:
Q  328 ttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttc 388  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||    
T  17970044 ttaattttaaatgatgtaaactttgataagaaaataagcaccaaggtatcttatagagttc 17969984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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