View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15833_low_8 (Length: 315)
Name: NF15833_low_8
Description: NF15833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15833_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 37444459 - 37444742
Alignment:
| Q |
13 |
tggacatcatcggatcttgaagcatttgattgttgatcgactcatctataacatatgatgttttttatgttagaagtgctaatgttgttgtgatgagcac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37444459 |
tggacatcatcggatcttgaagcatttgattgttgatcgactcatctataacatatgatgttttttatgttagaagtgctaatgttgttgtgatgagcac |
37444558 |
T |
|
| Q |
113 |
acatgtattattatggaatactataactaatggaaatttttgctacctgaagttgggttgttataatttgaaattagatgcaatgtgccaaattgttgaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37444559 |
acatgtattattatggaatactataactaatggaaatttttgctacctgaagttgggttgttataatttgaaattagaggcaatgtgccaaattgttgaa |
37444658 |
T |
|
| Q |
213 |
tttgttggtccataaccgaggaagtttctgaataatgactaaaattaagttgtgttgttctctgatctaaatgtgaatcaaaat |
296 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37444659 |
tttgttggtccataaccaaggaggtttctgaataatgactaaaattaagttgtgttgtcctctgatctaaatgtgaatcaaaat |
37444742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University