View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15834_high_16 (Length: 222)
Name: NF15834_high_16
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15834_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 338082 - 338275
Alignment:
| Q |
11 |
agcaaaggaggaatttaatttgatgtcttctctcaaataactaaataataccagtagcatggtactataatgtgggaagtatagtatgaagaaatatact |
110 |
Q |
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| T |
338082 |
agcaaaagaggaatttaatttgatgtcttctctcaaataactaaataatactagtagcatggtactataatgtgggaagta--gtatgaagaaatatact |
338179 |
T |
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| Q |
111 |
atcaaaaaatttaaatatatttatttaaacaaagtgtagtaagattaatattttgattgccggtttcatttataactacatggattatgtaagttt |
206 |
Q |
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| T |
338180 |
atcaaaaaatttaaatatatttatttaaacaaagtgtagtaagattaatattttgattgccggtttcatttataactacatggattatgtaagttt |
338275 |
T |
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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 342215 - 342307
Alignment:
| Q |
43 |
tcaaataactaaataataccagtagcatggtactataatgtgggaagtatagtatgaagaaatata-ctatcaaaaaatttaaatatatttatttaaa |
139 |
Q |
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|||||||||||||||||| |||| |||||||||| || || |||||| ||| | |||||||| ||||| |||| |||||||||||||||||||| |
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| T |
342215 |
tcaaataactaaataata---gtagtatggtactatcatttgagaagtaa--tataatgaaatatatctatctaaaattttaaatatatttatttaaa |
342307 |
T |
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