View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15834_low_10 (Length: 345)
Name: NF15834_low_10
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15834_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 1021414 - 1021089
Alignment:
| Q |
13 |
gaacctgtgaggcgaagagagttacagtaatcagaatgagccgctgcgaggtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgc |
112 |
Q |
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| T |
1021414 |
gaaccggtgaggcgaagagagttacagtaatcagaatgagccgctgcgaggtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgc |
1021315 |
T |
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| Q |
113 |
accgtcgtaccgtttcttcgttgtcgagtttagacaccgtacaacccattgtttcaggtggtatatatataccgta-----------tatttgaacgtgt |
201 |
Q |
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| T |
1021314 |
accgtcgtaccgtttcttcgttgtcgagtttagacacagtgcaacccattgtttcaggtggtatatatataccgtatattatacacgtatttgaacgtct |
1021215 |
T |
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| Q |
202 |
gtatgcgtatattaaacaaaaacaaatgttgaagaaggttttgaagggaaac-aagaacttgaaaaac-aagtgcaagtgttagttaatctgaagtgcta |
299 |
Q |
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| T |
1021214 |
gtatgcgtatattaaacaaaaacaaatgttgaagaaggttttgaagggaaacaaagaacttgaaaaacaaagtgcaagt----gttaatctgaagtgc-- |
1021121 |
T |
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| Q |
300 |
tgatatctaggttggttaggtttattgaaatgatg |
334 |
Q |
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| T |
1021120 |
---tatctaggttggttaggtttactgaagtgatg |
1021089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 4970775 - 4970737
Alignment:
| Q |
13 |
gaacctgtgaggcgaagagagttacagtaatcagaatga |
51 |
Q |
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| T |
4970775 |
gaaccggtgaggcgaagagagttatagtaatcagaatga |
4970737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 6345053 - 6345091
Alignment:
| Q |
13 |
gaacctgtgaggcgaagagagttacagtaatcagaatga |
51 |
Q |
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| T |
6345053 |
gaaccggtgaggcgaagagagttacagtaatcagaatga |
6345091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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