View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15834_low_11 (Length: 324)

Name: NF15834_low_11
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15834_low_11
NF15834_low_11
[»] chr7 (6 HSPs)
chr7 (8-216)||(32811951-32812155)
chr7 (20-97)||(32829599-32829676)
chr7 (242-286)||(7249065-7249109)
chr7 (239-279)||(16577875-16577915)
chr7 (239-279)||(16587747-16587787)
chr7 (239-279)||(34773237-34773277)
[»] chr6 (5 HSPs)
chr6 (240-280)||(14917791-14917831)
chr6 (239-289)||(34701143-34701193)
chr6 (239-280)||(8637452-8637493)
chr6 (239-280)||(21847199-21847240)
chr6 (237-289)||(5655320-5655372)
[»] chr4 (5 HSPs)
chr4 (239-287)||(21623434-21623482)
chr4 (239-288)||(4485848-4485897)
chr4 (237-289)||(3251340-3251392)
chr4 (241-289)||(8494983-8495031)
chr4 (241-289)||(10082398-10082446)
[»] chr8 (2 HSPs)
chr8 (237-292)||(37141350-37141405)
chr8 (239-289)||(10225321-10225371)
[»] chr5 (2 HSPs)
chr5 (238-289)||(21636338-21636389)
chr5 (238-289)||(21644585-21644636)
[»] chr3 (5 HSPs)
chr3 (237-288)||(1744003-1744054)
chr3 (239-289)||(35863828-35863878)
chr3 (239-280)||(27185482-27185523)
chr3 (236-280)||(759606-759650)
chr3 (237-289)||(10926465-10926517)
[»] chr2 (5 HSPs)
chr2 (239-289)||(10735846-10735896)
chr2 (239-289)||(24592861-24592911)
chr2 (239-289)||(26999106-26999156)
chr2 (238-282)||(8920491-8920535)
chr2 (237-289)||(22523025-22523077)
[»] chr1 (5 HSPs)
chr1 (239-289)||(8269383-8269433)
chr1 (236-282)||(32075256-32075302)
chr1 (237-287)||(45190282-45190332)
chr1 (241-289)||(4302448-4302496)
chr1 (237-289)||(27533239-27533291)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 32812155 - 32811951
Alignment:
Q  8 tgtcgaagaatattttgaggctatgcccatcaatggctgcatggcttcttgtgatgccaaatgcgaaaccaccacacttgaaggatgttacctatcaaag 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32812155 tgtctaagaatattttgaggctatgcccatcaatggctgcatggcttcttgtgatgccaaatgcgaaaccaccacacttgaaggatgttacctatcaaag 32812056  T
Q  108 caaatcagtaataacattagtttctagtgtataactaatgttaatttgaatcaattaatacattattgaatatattttcgtttcaaccagggaatttaat 207  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||| ||    
T  32812055 caaatcagtaataacattagtttctagtatataactaaagttaatttgaatcaattaatacatta---aatatattttcgtttcaaccaggg-attttat 32811960  T
Q  208 atctatcta 216  Q
    |||||||||    
T  32811959 atctatcta 32811951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 32829676 - 32829599
Alignment:
Q  20 ttttgaggctatgcccatcaatggctgcatggcttcttgtgatgccaaatgcgaaaccaccacacttgaaggatgtta 97  Q
    |||||| |||| | ||||||| || | |||||||| |||||| ||| |  ||||||||||||||||||||||||||||    
T  32829676 ttttgaagctaagtccatcaaaggttacatggcttgttgtgaagcctatagcgaaaccaccacacttgaaggatgtta 32829599  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 7249065 - 7249109
Alignment:
Q  242 ttgcatatactatgtatcgtccctaccaactgaactaagtttacg 286  Q
    ||||||||| ||||||| |||| |||||||||| |||||||||||    
T  7249065 ttgcatatattatgtattgtccttaccaactgatctaagtttacg 7249109  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 16577875 - 16577915
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaa 279  Q
    |||||||||||| ||||||| ||||||||||||||| ||||    
T  16577875 accttgcatatattatgtattgtccctaccaactgagctaa 16577915  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 16587787 - 16587747
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaa 279  Q
    |||||||||||| ||||||| ||||||||||||||| ||||    
T  16587787 accttgcatatattatgtattgtccctaccaactgagctaa 16587747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 34773277 - 34773237
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaa 279  Q
    |||||||||||| |||| || ||||||||||||||||||||    
T  34773277 accttgcatatattatgcattgtccctaccaactgaactaa 34773237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 14917791 - 14917831
Alignment:
Q  240 ccttgcatatactatgtatcgtccctaccaactgaactaag 280  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  14917791 ccttgcatatattatgtatcgtccctaccaactgagctaag 14917831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 34701193 - 34701143
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||| |||| || || |||||||||||||||||||| ||||||    
T  34701193 accttgcatatattatgcattgttcctaccaactgaactaagttcacgagg 34701143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 8637452 - 8637493
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaag 280  Q
    |||||||||||| |||| || |||||||||||||||||||||    
T  8637452 accttgcatatattatgcattgtccctaccaactgaactaag 8637493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 21847240 - 21847199
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaag 280  Q
    |||||||||||| ||||||| ||||||||||||||| |||||    
T  21847240 accttgcatatattatgtattgtccctaccaactgagctaag 21847199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 5655320 - 5655372
Alignment:
Q  237 gaaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    ||||| |||||||| ||||||| ||||||||||||||| ||||| | ||||||    
T  5655320 gaaccgtgcatatattatgtattgtccctaccaactgagctaagctcacgagg 5655372  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 21623434 - 21623482
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacga 287  Q
    |||||||||||| |||| || ||||||||||||||||||||||| ||||    
T  21623434 accttgcatatattatgcattgtccctaccaactgaactaagttcacga 21623482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 4485848 - 4485897
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacgag 288  Q
    |||||||||||||||||||| |||| || ||| ||||||||||| |||||    
T  4485848 accttgcatatactatgtattgtccttatcaattgaactaagttcacgag 4485897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 3251340 - 3251392
Alignment:
Q  237 gaaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||| ||| ||||||| || | ||||||||||| |||||||||||||    
T  3251340 gaaccttgcaaatattatgtattgttcttaccaactgaattaagtttacgagg 3251392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 8495031 - 8494983
Alignment:
Q  241 cttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||| |||| || ||||||||||||||| ||||||| ||||||    
T  8495031 cttgcatatattatgcattgtccctaccaactgagctaagttcacgagg 8494983  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 10082446 - 10082398
Alignment:
Q  241 cttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||| ||||| ||||||| ||||||||||||||| ||||||| ||||||    
T  10082446 cttgtatatattatgtattgtccctaccaactgagctaagttcacgagg 10082398  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 37141405 - 37141350
Alignment:
Q  237 gaaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgagggca 292  Q
    |||||||||||||| |||| || |||| ||||||||||| |||||||| |||||||    
T  37141405 gaaccttgcatatattatgcattgtccataccaactgaattaagtttatgagggca 37141350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 10225371 - 10225321
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    ||||||||||| ||||| || ||||| ||||||||| ||||||||||||||    
T  10225371 accttgcatattctatgcattgtcccaaccaactgagctaagtttacgagg 10225321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 21636338 - 21636389
Alignment:
Q  238 aaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||||  ||| || |||||||| |||||||||||||||||||||    
T  21636338 aaccttgcatatatcatgcattgtccctacgaactgaactaagtttacgagg 21636389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 21644585 - 21644636
Alignment:
Q  238 aaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||||  ||| || |||||||| |||||||||||||||||||||    
T  21644585 aaccttgcatatatcatgcattgtccctacgaactgaactaagtttacgagg 21644636  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 1744003 - 1744054
Alignment:
Q  237 gaaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgag 288  Q
    |||||||||||||| ||||||| |||| ||||||||||| |||||| |||||    
T  1744003 gaaccttgcatatattatgtattgtccataccaactgaattaagttcacgag 1744054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 35863828 - 35863878
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||| ||||||| |||| |||||||||| ||||| ||||||||    
T  35863828 accttgcatatattatgtattgtccttaccaactgagctaagcttacgagg 35863878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 27185523 - 27185482
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaag 280  Q
    |||||||||||| ||||||| ||||||||||||||| |||||    
T  27185523 accttgcatatattatgtattgtccctaccaactgagctaag 27185482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 759606 - 759650
Alignment:
Q  236 tgaaccttgcatatactatgtatcgtccctaccaactgaactaag 280  Q
    ||||| ||||||||| |||| || |||||||||||||||||||||    
T  759606 tgaactttgcatatattatgcattgtccctaccaactgaactaag 759650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 10926517 - 10926465
Alignment:
Q  237 gaaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||||| |||| || |||| |||||||||| ||||| ||||||||    
T  10926517 gaaccttgcatatattatgcattgtccttaccaactgagctaagcttacgagg 10926465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 10735846 - 10735896
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||| |||| |||||||||||||||||| ||||| | ||||||    
T  10735846 accttgcatatattatgcatcgtccctaccaactgagctaagctcacgagg 10735896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 24592861 - 24592911
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||| |||| || ||||||||||||||| ||||||| ||||||    
T  24592861 accttgcatatattatgcattgtccctaccaactgagctaagttcacgagg 24592911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 26999156 - 26999106
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||| |||| || ||| ||||||||||||||||||| ||||||    
T  26999156 accttgcatatattatgcattgtctctaccaactgaactaagttcacgagg 26999106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 8920535 - 8920491
Alignment:
Q  238 aaccttgcatatactatgtatcgtccctaccaactgaactaagtt 282  Q
    ||||||||||||| ||||||  ||||||||||||||| |||||||    
T  8920535 aaccttgcatatattatgtactgtccctaccaactgacctaagtt 8920491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 22523025 - 22523077
Alignment:
Q  237 gaaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||||| ||||||| |||| |||||||||| ||||| | ||||||    
T  22523025 gaaccttgcatatattatgtattgtccataccaactgagctaagctcacgagg 22523077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 8269383 - 8269433
Alignment:
Q  239 accttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||| ||||||| |||| |||||||||| ||||||| ||||||    
T  8269383 accttgcatatattatgtattgtccttaccaactgagctaagttcacgagg 8269433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 32075256 - 32075302
Alignment:
Q  236 tgaaccttgcatatactatgtatcgtccctaccaactgaactaagtt 282  Q
    ||||||||||||||||||||||| |||| || ||||||| |||||||    
T  32075256 tgaaccttgcatatactatgtattgtccttatcaactgagctaagtt 32075302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 45190282 - 45190332
Alignment:
Q  237 gaaccttgcatatactatgtatcgtccctaccaactgaactaagtttacga 287  Q
    |||||||||||||| |||| || |||| |||||||||||||||||| ||||    
T  45190282 gaaccttgcatatattatgcattgtccataccaactgaactaagttcacga 45190332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 4302496 - 4302448
Alignment:
Q  241 cttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||| |||| || |||| |||||||| ||||||||||||||||    
T  4302496 cttgcatatattatgcattgtccataccaactaaactaagtttacgagg 4302448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 27533291 - 27533239
Alignment:
Q  237 gaaccttgcatatactatgtatcgtccctaccaactgaactaagtttacgagg 289  Q
    |||||||||||||| |||| || ||||||||||||||| ||||| | ||||||    
T  27533291 gaaccttgcatatattatgcattgtccctaccaactgatctaagctcacgagg 27533239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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