View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15834_low_12 (Length: 318)
Name: NF15834_low_12
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15834_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 1516456 - 1516159
Alignment:
| Q |
10 |
catcatcatcagtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgc |
109 |
Q |
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| T |
1516456 |
catcatcatcagtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgc |
1516357 |
T |
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| Q |
110 |
agcagcaacagcctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccaggaaacgtaatcgaaaaaatataatttaatattccactatttg |
209 |
Q |
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| T |
1516356 |
agcagcaacagcctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccaggaaacgtaatcgaaaaaatataatttaatattccactatttg |
1516257 |
T |
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| Q |
210 |
caagcaagtaatatgacataaacacacaagtagaaggattattgatatgcaaagaaagataaaacattgactgaccatttcaataacttcagattcat |
307 |
Q |
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| T |
1516256 |
caagcaagtaatatgacataaacacacaagtagaaggattattgatatgcaaagaaagataaaacgttgactgaccatttcaataacttcagattcat |
1516159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 36613535 - 36613686
Alignment:
| Q |
13 |
catcatcagtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgcagc |
112 |
Q |
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| T |
36613535 |
catcatcggcgccactttcttcttctgaatctatttcactatcatc---agcagccaatgaaatcacaggctgacaactggaaacagctgactctgcagc |
36613631 |
T |
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| Q |
113 |
agcaacagcctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccag |
167 |
Q |
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| T |
36613632 |
tgccacagcctctggtgtatgaagatcagcaacaccaagcatcaaatcctgccag |
36613686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 36613768 - 36613808
Alignment:
| Q |
267 |
gataaaacattgactgaccatttcaataacttcagattcat |
307 |
Q |
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| T |
36613768 |
gatagaacattgactaaccatttcaataacttcggattcat |
36613808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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