View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15834_low_15 (Length: 259)
Name: NF15834_low_15
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15834_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 1020749 - 1020598
Alignment:
| Q |
113 |
atctttggtctcttccatatcttctttaatcaatcaatttatt---ctttaaaaatcataccaatgaattgatccttacttattatataaagggaactt- |
208 |
Q |
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| T |
1020749 |
atctttgaactcttccatatcttctttaatcaatcaatttattattctttaaaaatcataccaatgaattgatccttac---ttatacaaagggaacttg |
1020653 |
T |
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| Q |
209 |
-----gtattcattagattggaatcctattaaccccttcttatcctaaaagctat |
258 |
Q |
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| T |
1020652 |
tattcgtattcattagattggaatcctattaaccccttcttatcctaaaagctat |
1020598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 1020876 - 1020802
Alignment:
| Q |
48 |
ccacattattaaaataaatcaaactattacaatcaatatttttagctttgttacttgtattgtttatctttggtc |
122 |
Q |
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| T |
1020876 |
ccacattattaaaataaatcaaattattacaatcaatatttttagctttgttacttgtattgtttatctttggtc |
1020802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 1020935 - 1020902
Alignment:
| Q |
10 |
gcagagaaatcaatgagcctacgagcaatttgtg |
43 |
Q |
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| T |
1020935 |
gcagagaaatcaatgagcctacgagcaatttgtg |
1020902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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