View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15834_low_19 (Length: 223)
Name: NF15834_low_19
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15834_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 24154155 - 24153964
Alignment:
| Q |
19 |
catacaggaagcctattcagatacgatccatcaacaaatgaaactacattgttgctcagcaatctaactgaggcatttggcgtagcagttagcaacgatg |
118 |
Q |
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| T |
24154155 |
catacaggaagcctattcagatacgatccatcaacaaatgaaactacattgttgctcagcaatctaactgaggcatttggggtagcagttagcaacgatg |
24154056 |
T |
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| Q |
119 |
gttcatttgtccttgttagcgagtataaggcgaacagaatccggagattctggttaacaggacctaatgcatatacttcagatatattcttg |
210 |
Q |
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| T |
24154055 |
gttcatttgtccttgttagcgagtataaggcgaacagaatccggagattctggttaacaggagctaatgcatatacttcagatatattcttg |
24153964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 24142577 - 24142392
Alignment:
| Q |
25 |
ggaagcctattcagatacgatccatcaacaaatgaaactacattgttgctcagcaatctaactgaggcatttggcgtagcagttagcaacgatggttcat |
124 |
Q |
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|||||||| ||||||||| ||||| |||| || | ||| |||||||||||| | |||||| || |||| || |||||||| |||| | ||||||||| |
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| T |
24142577 |
ggaagcctgttcagatacaatccaacaacgaaagtaaccacattgttgctccgtaatctagctatggcaacaggggtagcagtaagcagcaatggttcat |
24142478 |
T |
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| Q |
125 |
ttgtccttgttagcgagtataaggcgaacagaatccggagattctggttaacaggacctaatgcatatacttcagatatattcttg |
210 |
Q |
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|||||||||| || ||||| |||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| |
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| T |
24142477 |
ttgtccttgtaagtgagtacaaggcgaatagaatccggagattctggcttacaggaccaaatgcatatacttcagatatattcttg |
24142392 |
T |
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