View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15834_low_2 (Length: 544)
Name: NF15834_low_2
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15834_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 7434608 - 7435125
Alignment:
| Q |
17 |
actttagaccattatacattacaaacaggctaaagaagctaattaaactaatgcctagtatatcctatcattcccccacaaactcagggtgactaaagac |
116 |
Q |
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| T |
7434608 |
actttagaccattatacattacaaacaggctaaagaagctaattaaactaatgcctggtatatcctatcattcccccacaaactcagggtgactaaagac |
7434707 |
T |
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| Q |
117 |
gaagttcaaacaaagggatattcgctttacactaaagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcat |
216 |
Q |
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| T |
7434708 |
gaagttcaaacaaagggatattcgctttacactaaagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcat |
7434807 |
T |
|
| Q |
217 |
tcttacaagttacaatggaaatgcaaaccacatcactatgtaaatagaaagagagttaatcttcataataaaattgacaaagcaaaattcatattatcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7434808 |
tcttacaagttacaatggaaatgcaaaccacatcactatgcaaatagaaagagagttaatcttcaaaataaaattgacaaagcaaaattcatattatcaa |
7434907 |
T |
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| Q |
317 |
atggttacttaatttgccaagcacttgatcacgaatatgatatgtgcaactggcaagccacttccaatacaaaaagtaaaaacctccataacagtcctct |
416 |
Q |
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| T |
7434908 |
atggttacttaatttgccaagcacttgatcacaaatatgatatgtgcaaccggcaagccacttccaatacaaaaagtaagaacctccataacagtcctct |
7435007 |
T |
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| Q |
417 |
tgggtcaaaacaaacagaaaaagttaattatgtatgcttctaattgaatgaaaactttccttataaattactatttgactcatgtctccttcgacaccaa |
516 |
Q |
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| T |
7435008 |
tgggtcaaatcaaacagaaaaagttaattatgtatgcttctaattgaatgaaaactttccttataaattactatttgactcatgtctccttcgacaccaa |
7435107 |
T |
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| Q |
517 |
gctccttaatcgtctgtg |
534 |
Q |
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| T |
7435108 |
gctccttaatcgtctgtg |
7435125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 119 - 332
Target Start/End: Original strand, 7523612 - 7523827
Alignment:
| Q |
119 |
agttcaaacaaagggatattcgctttacacta--aagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcat |
216 |
Q |
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|||||||||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7523612 |
agttcaaacagagggatattctcattacactataaagatttccaaatataatctatatctacataaaattagaggtcattcagtagaggcaaaagatcat |
7523711 |
T |
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| Q |
217 |
tcttacaagttacaatggaaatgcaaaccacatcactatgtaaatagaaagagagttaatcttcataataaaattgacaaagcaaaattcatattatcaa |
316 |
Q |
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| T |
7523712 |
tcttacaagttacaatggaaatgcaaaccatgtcagtatgcgaatagaaaaagagtaaaacttcaaaataaaattgacaaagcaaaattcatattatcaa |
7523811 |
T |
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| Q |
317 |
atggttacttaatttg |
332 |
Q |
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| T |
7523812 |
atggttacttaatttg |
7523827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 434 - 534
Target Start/End: Original strand, 7523854 - 7523954
Alignment:
| Q |
434 |
aaaaagttaattatgtatgcttctaattgaatgaaaactttccttataaattactatttgactcatgtctccttcgacaccaagctccttaatcgtctgt |
533 |
Q |
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| T |
7523854 |
aaaaaattaattatgtatgcttctaattgaaagaaaactttccttataaattactatttgactcatgtctccttcgacaccaagctccttaatcgtctgt |
7523953 |
T |
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| Q |
534 |
g |
534 |
Q |
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| T |
7523954 |
g |
7523954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 183 - 319
Target Start/End: Complemental strand, 7521074 - 7520942
Alignment:
| Q |
183 |
aattggaggtcattcagtagaggcaaaagatcattcttacaagttacaatggaaatgcaaaccacatcactatgtaaatagaaagagagttaatcttcat |
282 |
Q |
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||||| ||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||| |
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| T |
7521074 |
aattgaaggtcgttcaggagaggcagaagatcaatcttacaagttacaatggaaatgcaaaccacatcaatatgcaaat----agagagtaaatcttcaa |
7520979 |
T |
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| Q |
283 |
aataaaattgacaaagcaaaattcatattatcaaatg |
319 |
Q |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
7520978 |
aataaaattgataaagcaaaattcatattatctaatg |
7520942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 7523561 - 7523610
Alignment:
| Q |
17 |
actttagaccattatacattacaaacaggctaaagaagctaattaaacta |
66 |
Q |
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| T |
7523561 |
actttagaccattatacattacaaacaggcgaaagaagctaattaaacta |
7523610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 455 - 531
Target Start/End: Complemental strand, 7520797 - 7520721
Alignment:
| Q |
455 |
tctaattgaatgaaaactttccttataaattactatttgactcatgtctccttcgacaccaagctccttaatcgtct |
531 |
Q |
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|||||| ||| |||| |||||||||||||||||||| ||||| |||||||| || |||||||||||||| |||||| |
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| T |
7520797 |
tctaatcgaaagaaagctttccttataaattactatctgactaatgtctccctcagcaccaagctccttagtcgtct |
7520721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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