View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15834_low_3 (Length: 502)

Name: NF15834_low_3
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15834_low_3
NF15834_low_3
[»] scaffold0286 (1 HSPs)
scaffold0286 (12-486)||(11981-12453)
[»] chr6 (12 HSPs)
chr6 (12-486)||(2170808-2171280)
chr6 (12-465)||(2187337-2187790)
chr6 (362-462)||(28246187-28246287)
chr6 (264-467)||(28191134-28191337)
chr6 (360-462)||(28151890-28151992)
chr6 (347-461)||(29828842-29828956)
chr6 (384-448)||(28192463-28192527)
chr6 (343-462)||(28328410-28328529)
chr6 (343-462)||(28506046-28506165)
chr6 (347-461)||(28095646-28095760)
chr6 (396-462)||(28526606-28526672)
chr6 (361-462)||(26814345-26814446)
[»] chr5 (1 HSPs)
chr5 (362-460)||(16693992-16694090)
[»] scaffold0038 (1 HSPs)
scaffold0038 (362-462)||(46349-46449)
[»] scaffold0019 (1 HSPs)
scaffold0019 (343-462)||(55481-55600)
[»] chr4 (1 HSPs)
chr4 (339-446)||(5088292-5088399)
[»] chr1 (1 HSPs)
chr1 (363-435)||(26138796-26138868)


Alignment Details
Target: scaffold0286 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 486
Target Start/End: Original strand, 11981 - 12453
Alignment:
12 gatatgaaagatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11981 gatatgaaagatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatag 12080  T
112 ttggaagtggaatgcctcataaattgtcttggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctcat 211  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12081 tttgaagtggaatgcctcataaattgtcctggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctcat 12180  T
212 gcaatgcaatccatcaaacgattttcttcgaaggtttgtcaatgtgaaagttttagacctatcgggaagtaatctcaccattctttcagaatgggtcaaa 311  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12181 gcaatgcaatccgtcaa-cgattttcttcgaaggtttgtcaatgtgaaagttttagacctatcgggaagtaatctcaccattctttcagaatgggtcaaa 12279  T
312 gagtgtcactttttacaaagactttgtttgaatgattgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacact 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
12280 gagtgtcactttttacaaagactttgtttgaatgattgcaagtatctccaagaaattacagggattccgccaagtttaaaatgcttgtctgcattacact 12379  T
412 gcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtattataactatctgacttcatatt 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
12380 gcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgta-tataactatctgacttcatatt 12453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 486
Target Start/End: Complemental strand, 2171280 - 2170808
Alignment:
12 gatatgaaagatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2171280 gatatgaaagatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatag 2171181  T
112 ttggaagtggaatgcctcataaattgtcttggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctcat 211  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2171180 tttgaagtggaatgcctcataaattgtcctggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctcat 2171081  T
212 gcaatgcaatccatcaaacgattttcttcgaaggtttgtcaatgtgaaagttttagacctatcgggaagtaatctcaccattctttcagaatgggtcaaa 311  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2171080 gcaatgcaatccgtcaa-cgattttcttcgaaggtttgtcaatgtgaaagttttagacctatcgggaagtaatctcaccattctttcagaatgggtcaaa 2170982  T
312 gagtgtcactttttacaaagactttgtttgaatgattgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacact 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
2170981 gagtgtcactttttacaaagactttgtttgaatgattgcaagtatctccaagaaattacagggattccgccaagtttaaaatgcttgtctgcattacact 2170882  T
412 gcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtattataactatctgacttcatatt 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
2170881 gcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgta-tataactatctgacttcatatt 2170808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 465
Target Start/End: Original strand, 2187337 - 2187790
Alignment:
12 gatatgaaagatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatag 111  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||| |||||||   | |||||||||| ||| ||||     
2187337 gatatgaaacatataacatacattgaattggttggtacttccatagaacaatttccattttcctttcaaaatctctccatggtccatactttacaaatat 2187436  T
112 ttggaagtggaatgcctcataaattgtcttggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctcat 211  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||    
2187437 ttggaagtggaaagcctcataatttgtcttggattaatgctcgtgaaaatgatataccgagctccacggtgtattcaaatgttcaatttcttcatctcat 2187536  T
212 gcaatgcaatccatcaaacgattttcttcgaaggtttgtcaatgtgaaagttttagacctatcgggaagtaatctcaccattctttcagaatgggtcaaa 311  Q
      |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||  |||||    
2187537 agaatgcaatccatcaaatgattttcttcgaaggtttgtcaatgtggaagttttagacctatcgggaagtaatctcaccgttctttcaaaatgcctcaaa 2187636  T
312 gagtgtcactttttacaaagactttgtttgaatgattgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacact 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |    
2187637 gagtgtcactttttacaaagactttgtttgaatgattgcaagtatctccaagaaattacagggattccgccaagtttaaaacgtttgtctgcattacaat 2187736  T
412 gcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtatt 465  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||    
2187737 gcaattcactgacttcctcatgtagaagcatgctacttagtcaggttttgtatt 2187790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 462
Target Start/End: Original strand, 28246187 - 28246287
Alignment:
362 agaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttg 461  Q
    |||||||| ||||||||| |||| |||||||| |||||||||| ||| |||||| |||||||||||||| || | || ||||||| | | ||||||||||    
28246187 agaaattagagggattccaccaaatttaaaacacttgtctgcaatacgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttg 28246286  T
462 t 462  Q
    |    
28246287 t 28246287  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 467
Target Start/End: Original strand, 28191134 - 28191337
Alignment:
264 ttagacctatcgggaagtaatctcaccattctttcagaatgggtcaaagagtgtcactttttacaaagactttgtttgaatgattgcaagtatctccaag 363  Q
    ||||||||||| |||| |||| |||| |||||| |||||||  ||||||| |||||| |||||      |||   ||| ||||||||||||  ||   ||    
28191134 ttagacctatcaggaaataatttcacaattcttccagaatgcatcaaagattgtcaccttttatcggatcttatattggatgattgcaagtgccttagag 28191233  T
364 aaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgta 463  Q
    |||||| ||||||||| | || ||||| |  ||||||||||  | ||||||| |||||||||||||| ||||||| ||||||| | | |||||||||||     
28191234 aaattagagggattccactaaatttaacaaacttgtctgcagcaaactgcaaatcattgacttcctcgtgtagaaacatgctattgaatcaggttttgtt 28191333  T
464 ttat 467  Q
    ||||    
28191334 ttat 28191337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 462
Target Start/End: Original strand, 28151890 - 28151992
Alignment:
360 caagaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttt 459  Q
    |||||||||| | || |||| |||| ||||||| |||||||||||||  | || || ||||  | |||||||||||||| ||||||||| | ||||||||    
28151890 caagaaattagatggtttccgccaaatttaaaatgcttgtctgcattgaattgtaaatcatcaagttcctcatgtagaaacatgctactgaatcaggttt 28151989  T
460 tgt 462  Q
    |||    
28151990 tgt 28151992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 461
Target Start/End: Original strand, 29828842 - 29828956
Alignment:
347 ttgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgcta 446  Q
    |||||||||||| | |||||||  |||| |||||||||  |||||||| ||||| ||||| |||||||| || ||||| |||   | |||| ||||||||    
29828842 ttgcaagtatcttcgagaaattcaaggggttcctccaaaattaaaacgtttgtccgcattgcactgcaaatctttgacatccatgtctagacgcatgcta 29828941  T
447 cttactcaggttttg 461  Q
    || | ||||||||||    
29828942 ctgaatcaggttttg 29828956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 28192527 - 28192463
Alignment:
384 agtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctact 448  Q
    ||||||||||  |||||||||||| | ||||| |||||||||||||| || || |||||||||||    
28192527 agtttaaaacatttgtctgcattaaattgcaaatcattgacttcctcttgcaggagcatgctact 28192463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 462
Target Start/End: Original strand, 28328410 - 28328529
Alignment:
343 atgattgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcat 442  Q
    ||||||||||||  || | |||||||| ||||||||| |||| |||||||   |||||||||  |  |||||| |||||||||||||| || | || |||    
28328410 atgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacat 28328509  T
443 gctacttactcaggttttgt 462  Q
    |||| | | |||||||||||    
28328510 gctattgaatcaggttttgt 28328529  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 462
Target Start/End: Original strand, 28506046 - 28506165
Alignment:
343 atgattgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcat 442  Q
    ||||||||||||  || | |||||||| ||||||||| |||| |||||||   |||||||||  |  |||||| |||||||||||||| || | || |||    
28506046 atgattgcaagtgccttcgagaaattagagggattccaccaaatttaaaatatttgtctgcaaaatgctgcaaatcattgacttcctcgtgcaaaaacat 28506145  T
443 gctacttactcaggttttgt 462  Q
    |||| | | |||||||||||    
28506146 gctattgaatcaggttttgt 28506165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 461
Target Start/End: Complemental strand, 28095760 - 28095646
Alignment:
347 ttgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgcta 446  Q
    |||||||  ||| |||||||||| ||  ||||| |||| |||||||  |||||||||  || | ||| | || |||| ||||||||||||||||||||||    
28095760 ttgcaagcttcttcaagaaattagagcaattccaccaaatttaaaattcttgtctgcgataaattgcgagtctttgagttcctcatgtagaagcatgcta 28095661  T
447 cttactcaggttttg 461  Q
    ||   ||||||||||    
28095660 ctggatcaggttttg 28095646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 28526606 - 28526672
Alignment:
396 ttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgt 462  Q
    |||||| ||||| | ||||| || |||||||| |||||||||||||||||| | | |||||||||||    
28526606 ttgtctccattaaattgcaaatcgttgacttcgtcatgtagaagcatgctaatgaatcaggttttgt 28526672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 26814345 - 26814446
Alignment:
361 aagaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggtttt 460  Q
    ||||||||| ||||||||| |||| | ||| |   ||||||||||| |  ||||| ||||||||||| ||| ||| |||||||||| ||| |||||| ||    
26814345 aagaaattaaagggattccgccaaatctaataacattgtctgcattgcggtgcaaatcattgacttcatcaagtaaaagcatgctaattagtcaggtatt 26814444  T
461 gt 462  Q
    ||    
26814445 gt 26814446  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 362 - 460
Target Start/End: Original strand, 16693992 - 16694090
Alignment:
362 agaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggtttt 460  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||| || ||  | || ||| |||||||||| |||||||||||||| | |||||||||    
16693992 agaaattagagggattcctccaaatttaaaacgtttgtctgcattgcaatgtgaatctttgtcttcctcatgcagaagcatgctactgaatcaggtttt 16694090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 462
Target Start/End: Original strand, 46349 - 46449
Alignment:
362 agaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttg 461  Q
    |||||||| ||||||||| |||| |||||||| |||||||||| ||| |||||| |||||||||||||| || | || ||||||| | | ||||||||||    
46349 agaaattagagggattccaccaaatttaaaacacttgtctgcaatacgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttg 46448  T
462 t 462  Q
    |    
46449 t 46449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 462
Target Start/End: Complemental strand, 55600 - 55481
Alignment:
343 atgattgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcat 442  Q
    ||||||||||||  || | |||||||| ||||||||| |||| | |||||| |||||||||| ||| |||||| |||||||||||||| || | |  |||    
55600 atgattgcaagtgccttcgagaaattagagggattccaccaaatgtaaaacacttgtctgcaatacgctgcaaatcattgacttcctcgtgcaaacacat 55501  T
443 gctacttactcaggttttgt 462  Q
    |||| | | |||||||||||    
55500 gctattgaatcaggttttgt 55481  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 446
Target Start/End: Complemental strand, 5088399 - 5088292
Alignment:
339 ttgaatgattgcaagtatctccaagaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaa 438  Q
    |||||||| ||||||| ||| |||||||||| |||||||||||||| | ||||   | |||||||||||| ||||   ||||| | ||||||| | ||||    
5088399 ttgaatgaatgcaagtctcttcaagaaattagagggattcctccaactctaaagaacatgtctgcattacgctgcgggtcattaaattcctcaagcagaa 5088300  T
439 gcatgcta 446  Q
    ||||||||    
5088299 gcatgcta 5088292  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 26138796 - 26138868
Alignment:
363 gaaattacagggattcctccaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgta 435  Q
    ||||||| ||||||||| |||| | |||||   || |||||| |||| ||||| |||||||||||||||||||    
26138796 gaaattaaagggattccaccaaatctaaaaaagttttctgcaatacaatgcaagtcattgacttcctcatgta 26138868  T

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