View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15834_low_4 (Length: 499)
Name: NF15834_low_4
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15834_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 880609 - 881092
Alignment:
| Q |
1 |
attgaatacctctttttaggatcaggaacaagaagattcgaaatcaatatcttagcatgtggagaaatccattcaggaaactcatattcgcctttaaaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880609 |
attgaatacctctttttaggatcaggaacaagaagattcgaaatcaacatcttagcatgtggagaaatccattcaggaaactcatattcgcctttaaaag |
880708 |
T |
|
| Q |
101 |
tctttctataaattctcataacattctcaccttgaaaaggaagatatccacaaagtaaagcatagagaattaccccacaagaccataagtcagctttgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
880709 |
tctttctataaattctcataacattctcaccttgaaaaggaagatatccacaaagtaaagcatagagaattaccccacaagaccataagtcagctttaga |
880808 |
T |
|
| Q |
201 |
accatcgtaacctttcttcttcaaaacctcaggtgccacgtaagcaggggttccacacggagttaaaagcatcccatcctctcggcgttgttctggcaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
880809 |
accatcgtaacctttcttcttcaaaacctcaggtgccacgtaagcaggggttccacatggagttaaaagcatcccatcctctcggcgttgttctggcaac |
880908 |
T |
|
| Q |
301 |
gctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880909 |
gctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaa |
881008 |
T |
|
| Q |
401 |
aatcaacagcactaatgagttgttgaaaatactttctagcaacatcttcattcaattttccttttgctaccttgttgaagagtt |
484 |
Q |
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| T |
881009 |
aatcaacagcactaatgagttgttgaaagtactttctagcaacatcttcattcaattttccttttgctaccttgttgaagagtt |
881092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 9995043 - 9995110
Alignment:
| Q |
310 |
ccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatg |
377 |
Q |
| |
|
|||||||| |||||||| | | | ||||||||||||| || |||||||||||||||||||| ||||| |
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| T |
9995043 |
ccaaaatctgagaccttcaaatttccgttttcatccaacagaagattttctggtttcaaatcacgatg |
9995110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 45268103 - 45268544
Alignment:
| Q |
1 |
attgaatacctctttttaggatcaggaacaagaagattcgaaatcaatatcttagcatgtggagaaatccattcaggaaactcatattcgcctttaaaag |
100 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||| | ||| ||||||||| |||||||| || ||||||||||| || || |||| || ||||||||| |
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| T |
45268103 |
attgaaaacctcttttcaggatcaacaacaagcaaattagaaatcaatttcttagcacccggtgaaatccattctggtaaaacataatcagctttaaaag |
45268202 |
T |
|
| Q |
101 |
tctttctataaattctcataacattctcaccttgaaaaggaagatatccacaaagtaaagcatagagaattaccccacaagaccataagtcagctttgga |
200 |
Q |
| |
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|| |||||||| ||||||||||||||||||||||| || | |||||||||||| |||||| | ||||| || ||||||||||| | |||||||| || |
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| T |
45268203 |
atttgctataaatcctcataacattctcaccttgaaagggcaaatatccacaaagcaaagcaaaaagaataacaccacaagaccaaatatcagcttttga |
45268302 |
T |
|
| Q |
201 |
accatcgtaacctttcttcttcaaaacctcaggtgccacgtaagcaggggttccacacggagttaaaagcatcccatcctctcggcgttgttctggcaac |
300 |
Q |
| |
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||||| ||||| ||||||||||||| |||||||| || |||||||| || ||||| || || | |||||| ||||| || ||||| || || || |
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| T |
45268303 |
tccatcataaccaatcttcttcaaaacttcaggtgcaacataagcaggagtcccacaaggtgtgagaagcattccatcggatctacgttgatcaggtaat |
45268402 |
T |
|
| Q |
301 |
gctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaa |
400 |
Q |
| |
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||||| | |||||||| || ||||| || ||||| ||||||||||| || ||||| || ||||| | ||| || ||||| || || |||||||| || | |
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| T |
45268403 |
gctgataaaccaaaatcagataccttaagatcttcattttcatccaaaagaagattctcgggtttaagatcacggtgtgtaactccccgactatgacaga |
45268502 |
T |
|
| Q |
401 |
aatcaacagcactaatgagttgttgaaaatactttctagcaa |
442 |
Q |
| |
|
|||| |||||||| || | |||||||||||||||||| |||| |
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|
| T |
45268503 |
aatctacagcactgatcaattgttgaaaatactttctggcaa |
45268544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 473
Target Start/End: Original strand, 3294060 - 3294244
Alignment:
| Q |
289 |
tgttctggcaacgctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccac |
388 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||||| || || | ||||||||||| | | || ||| || ||||| ||||| ||||| | ||||| | |
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| T |
3294060 |
tgttcaggcaaagcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctc |
3294159 |
T |
|
| Q |
389 |
gactatggcaaaaatcaacagcactaatgagttgttgaaaatactttctagcaacatcttcattcaattttccttttgctacctt |
473 |
Q |
| |
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|||||||||| |||| |||||||| || || ||||| || |||||||| |||| ||||| || ||||| |||||||||||||| |
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| T |
3294160 |
tactatggcaataatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctacctt |
3294244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 27312268 - 27312300
Alignment:
| Q |
225 |
aacctcaggtgccacgtaagcaggggttccaca |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
27312268 |
aacctcaggtgccacgtaagcaggggttccaca |
27312300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 27006956 - 27006916
Alignment:
| Q |
337 |
ttttcatccaagagtagattttctggtttcaaatcgcgatg |
377 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
27006956 |
ttttcatccaatagtagattttcgggtttcaaatctcgatg |
27006916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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