View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15834_low_7 (Length: 429)

Name: NF15834_low_7
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15834_low_7
NF15834_low_7
[»] chr6 (2 HSPs)
chr6 (18-412)||(4409573-4409967)
chr6 (366-412)||(4405894-4405940)
[»] chr5 (2 HSPs)
chr5 (27-69)||(12037521-12037563)
chr5 (21-69)||(11858702-11858750)
[»] chr2 (4 HSPs)
chr2 (366-406)||(855769-855809)
chr2 (367-413)||(31994841-31994888)
chr2 (366-412)||(34904013-34904060)
chr2 (295-331)||(42808667-42808703)
[»] chr1 (1 HSPs)
chr1 (366-406)||(33753085-33753125)
[»] chr8 (2 HSPs)
chr8 (304-364)||(39046582-39046644)
chr8 (313-364)||(2784958-2785011)
[»] scaffold0276 (1 HSPs)
scaffold0276 (295-351)||(3641-3698)
[»] chr4 (1 HSPs)
chr4 (295-332)||(53259755-53259792)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 4409967 - 4409573
Alignment:
Q  18 gaaacatcaaccagtttgaaaacaatctcaaacaaatcaatgacaaagtccaccgactcatcaaaatcatttagcaattatcgatttgatggagcatctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4409967 gaaacatcaaccagtttgaaaacaatctcaaacaaatcaatgacaaagtccaccgactcatcaaaatcatttagcaattatcgatttgatggagcatctt 4409868  T
Q  118 cattgtaaggagagtatcaaaacgggattaaacataataaatcgttatccattcaaatcaacaaagccaccgaggaacttgaactcctgctgaacgaaga 217  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  4409867 cgttgtaaggagagtattaaaacgggattaaacataataaatcgttatccattcaaatcaacaaagccaccgaggaacatgaact-ctgctgaacgaaga 4409769  T
Q  218 acgatggataagaagaaaccagcgtcacacaaaaatataaggtgtgtaacttaactcacgcagcgcgagttaagtacttaagtaacgcaggagtattttc 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  4409768 acgatggagaagaagaaaccagcgtcacacaaaaatataaggtgcgtaacttaactcacgcagcgcgagttaagtacttaagtaacgcaggggtattttt 4409669  T
Q  318 gtcatggctgcagga-acgagcgaaaagtgcaaggagagagcagaatttatatgtttttagtcctacaaaatctcaagtttttaagtttaatccct 412  Q
    ||||||| ||||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4409668 gtcatggttgcaggatacgggcgaaaagtgcagggggagagcagaatttatatgtttttagtcctacaaaatcacaagtttttaagtttaatccct 4409573  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 4405940 - 4405894
Alignment:
Q  366 atatgtttttagtcctacaaaatctcaagtttttaagtttaatccct 412  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||    
T  4405940 atatgtttttagtcctacaaaatcataagtttttaagtttagtccct 4405894  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 12037521 - 12037563
Alignment:
Q  27 accagtttgaaaacaatctcaaacaaatcaatgacaaagtcca 69  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  12037521 accagcttgaaaacaatcttaaacaaatcaatgacaaagtcca 12037563  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 11858702 - 11858750
Alignment:
Q  21 acatcaaccagtttgaaaacaatctcaaacaaatcaatgacaaagtcca 69  Q
    |||||| |||| ||||||||| ||||| |||||||||||||||||||||    
T  11858702 acatcacccagcttgaaaacattctcacacaaatcaatgacaaagtcca 11858750  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 855809 - 855769
Alignment:
Q  366 atatgtttttagtcctacaaaatctcaagtttttaagttta 406  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  855809 atatgtttttagtcctacaaaatttcaaggttttaagttta 855769  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 31994888 - 31994841
Alignment:
Q  367 tatgtttttagtcc-tacaaaatctcaagtttttaagtttaatccctt 413  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  31994888 tatgtttttagtccctacaaaatcacaaatttttaagtttaatccctt 31994841  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 34904013 - 34904060
Alignment:
Q  366 atatgtttttagtcc-tacaaaatctcaagtttttaagtttaatccct 412  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  34904013 atatgtttttagtccctacaaaatcacaagtttttaagtttagtccct 34904060  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 42808667 - 42808703
Alignment:
Q  295 ttaagtaacgcaggagtattttcgtcatggctgcagg 331  Q
    |||| |||||||||||||||||| |||||||||||||    
T  42808667 ttaactaacgcaggagtattttcatcatggctgcagg 42808703  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 33753125 - 33753085
Alignment:
Q  366 atatgtttttagtcctacaaaatctcaagtttttaagttta 406  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  33753125 atatgtttttagtcctacaaaatcacaagttttaaagttta 33753085  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 39046644 - 39046582
Alignment:
Q  304 gcaggagtattttcgtcatggctgcagga-acgagcgaaaagtgca-aggagagagcagaatt 364  Q
    ||||| |||||||||||||||||||||||  |||||||||||||||  |||||||||| ||||    
T  39046644 gcaggggtattttcgtcatggctgcaggacgcgagcgaaaagtgcaggggagagagcataatt 39046582  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 2785011 - 2784958
Alignment:
Q  313 ttttcgtcatggctgca-ggaacgagcgaaaagtgcaaggag-agagcagaatt 364  Q
    ||||||||||||||||| || |||||||||||||||| |||| |||||||||||    
T  2785011 ttttcgtcatggctgcagggcacgagcgaaaagtgcagggagaagagcagaatt 2784958  T

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Target: scaffold0276 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 3641 - 3698
Alignment:
Q  295 ttaagtaacgcaggagtattttcgtcatggctgca-ggaacgagcgaaaagtgcaagg 351  Q
    |||| ||||||||||||||||| |||||||||||| ||  ||||||||||||| ||||    
T  3641 ttaactaacgcaggagtattttagtcatggctgcagggcgcgagcgaaaagtgaaagg 3698  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 53259792 - 53259755
Alignment:
Q  295 ttaagtaacgcaggagtattttcgtcatggctgcagga 332  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  53259792 ttaactaacgcaggagtattttcgtcatagctgcagga 53259755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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