View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15834_low_9 (Length: 363)
Name: NF15834_low_9
Description: NF15834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15834_low_9 |
 | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0434 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0049 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 39592 - 39253
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39592 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttatagtcaaactgcgcaaaaaagaggattttgaaaatatccag |
39493 |
T |
|
| Q |
118 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagtgaactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
39492 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttctttatttatatttataggttgagttcataaagtgaactt |
39393 |
T |
|
| Q |
218 |
agtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgttcaacacgagacaaatttccagca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39392 |
agtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaacactgatgagcaatgttcaacacgagacaaatttccagca |
39293 |
T |
|
| Q |
318 |
agtgcaaaatcattttctctactagctttttgatgatgtc |
357 |
Q |
| |
|
| ||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
39292 |
actgcaaaaccattttctctactagctttttgttgatgtc |
39253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 44680409 - 44680070
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44680409 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcaaagtacttttatagtcaaactgagcaaaaaagaggattttgaaaatatccag |
44680310 |
T |
|
| Q |
118 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagtgaactt |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44680309 |
ctgtgttagtcattcttgttctaactctctctaacctaacaaactcttggagtttttgttctttatttatttttataggttgagttgataaagtgaactt |
44680210 |
T |
|
| Q |
218 |
agtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgttcaacacgagacaaatttccagca |
317 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44680209 |
aatttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaggaccgatgagcaatgttcaacacgagacaaatttccagca |
44680110 |
T |
|
| Q |
318 |
agtgcaaaatcattttctctactagctttttgatgatgtc |
357 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
44680109 |
agtgcaaaaccattttctctaatagctttttgttgatgtc |
44680070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 41362367 - 41362556
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaa-aagaggattttgaaaatatcca |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| | ||| |||||||| ||||||||||||||||||| | |
|
|
| T |
41362367 |
tttttacggtcaattttaagtagttttcagttaagttgagtcaattcatggtgttttaatagtttaaccgagcaaaaaaagaggattttgaaaatattcg |
41362466 |
T |
|
| Q |
117 |
gttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgat |
206 |
Q |
| |
|
||||| |||||||| ||| || |||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
41362467 |
gttgtattagtcatgcttatttaaattctctctaacctaacaattttttggagtttttgttcgctatttatttttataggttgagttgat |
41362556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 274762 - 275101
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
274762 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgcttttatagtcaaaccgagcaaaaaagaggattttgaaaatatccag |
274861 |
T |
|
| Q |
118 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagtgaactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
274862 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttctttatttattttcttaggttgagttgataaagtgaactt |
274961 |
T |
|
| Q |
218 |
agtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgttcaacacgagacaaatttccagca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
274962 |
agtttcgagaagtcatgagtggttaattcaagcacagaatcaatgttgtgaagcataaaagaacgatgaccaatgttcaacacaagacaaatttccagca |
275061 |
T |
|
| Q |
318 |
agtgcaaaatcattttctctactagctttttgatgatgtc |
357 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
275062 |
agtgcaaaaccattttctctactagctttttgttgatgtc |
275101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0434 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0434
Description:
Target: scaffold0434; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 10285 - 10615
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccag |
117 |
Q |
| |
|
|||||||||||| || ||| ||||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10285 |
tttttacagtcagttctaaatagttttaagttaagttgaatcaattcaaagtgcttttatagtcaaactgagcaaaaaagagaattttgaaaatatccag |
10384 |
T |
|
| Q |
118 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagtgaactt |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
10385 |
ttatgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttctttatttatttttataggttgagttgacaaagtgaactt |
10484 |
T |
|
| Q |
218 |
agtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgttcaacacgagacaaatttccagca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10485 |
agtttcgagaagtcatgagtggttaattcaagcacgaaatcaatgttgtgaagcatgaaagaccgatgagcaatgttcaacacgagacaaatttccagca |
10584 |
T |
|
| Q |
318 |
agtgcaaaatcattttctctactagcttttt |
348 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
|
|
| T |
10585 |
agtgcaaaaccattttctctactagcttttt |
10615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 55586018 - 55585689
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccag |
117 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
55586018 |
tttttacggtcaattttaagtaattttcagttaagttgaattaattcagagtgcttttatagtcaaattgagcaaaaaagaggattttgaaaatatctaa |
55585919 |
T |
|
| Q |
118 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttattttt-ataggtcgagttgataaagtgaact |
216 |
Q |
| |
|
|||||| || ||||||||| |||||||||||||||||||||| || |||||||| || | | ||||||||||| | |||| |||||||||| ||||||| |
|
|
| T |
55585918 |
ctgtgttggtaattcttgttttaattctctctaacctaacaaattcgtggagtttgtg-tctctatttatttttgacaggttgagttgataacgtgaact |
55585820 |
T |
|
| Q |
217 |
tagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgttcaacacgagac-aaatttccag |
315 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||| | |||||||||||| | ||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
55585819 |
tagtttcgaacagtcatgaatggttaattcaagcacgtaatcgaagttttgaagcatgagagaccgatgagcaatgttcaacacgagacaaaattttcaa |
55585720 |
T |
|
| Q |
316 |
caagtgcaaaatcattttctctactagcttt |
346 |
Q |
| |
|
|||||||| || ||||||||||||||||||| |
|
|
| T |
55585719 |
caagtgcataaccattttctctactagcttt |
55585689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 3217102 - 3216898
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaa---aaaagaggattttgaaaatatc |
114 |
Q |
| |
|
|||||||| | | |||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3217102 |
tttttacatttatttttaagtagttttaagttaagttgaatcaattcagagtgcttttaaagtcaaactgagcaaaaaaaaagaggattttgaaaatatc |
3217003 |
T |
|
| Q |
115 |
cagttgtgttagtcattcttg-ttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagtga |
213 |
Q |
| |
|
|| |||||||||| ||||||| || || |||||||||||| |||||| | |||||||||||||| | |||| |||||| |||| ||||||| |||||| |
|
|
| T |
3217002 |
caattgtgttagttattcttgtttatagttctctctaaccaaacaaatttttggagtttttgttctctattattttttagaggttgagttgaggaagtga |
3216903 |
T |
|
| Q |
214 |
actta |
218 |
Q |
| |
|
||||| |
|
|
| T |
3216902 |
actta |
3216898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 46673165 - 46672978
Alignment:
| Q |
30 |
attttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtca |
129 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| || |||||| ||||| | | || |||||||||| |||||||| ||||||||| ||||| | || | | |
|
|
| T |
46673165 |
atttcaagtagttttgagttaagttgaatcattttagagtgcttttaaagttaagctgagcaaaatagaggattgtgaaaatattcagttatattgatta |
46673066 |
T |
|
| Q |
130 |
ttcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagtgaactta |
218 |
Q |
| |
|
|| | |||||||| |||||||| |||||| |||||||||||||||| | || |||||||| ||||| || ||||||||||||||||| |
|
|
| T |
46673065 |
ttttgtttctaattgtctctaactaaacaaattcttggagtttttgttctcta-ttatttttttaggttgaattgataaagtgaactta |
46672978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 53435889 - 53435996
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgt-ttttataatcaaactgagcaaaaaagaggattttgaaaatatcca |
116 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| |||| | |||||||||| | ||||||||||||| ||||||| | |
|
|
| T |
53435889 |
tttttagagtcatttttaagtagttttaagttaaattgaatcaattcaaagtgtattttggagtcaaactgag-ataaaagaggattttaaaaatattta |
53435987 |
T |
|
| Q |
117 |
gttgtgtta |
125 |
Q |
| |
|
||||||||| |
|
|
| T |
53435988 |
gttgtgtta |
53435996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 16419600 - 16419759
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccag |
117 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| |||||||| |||||| |||| ||||||| ||||||||| | ||||||| ||||| |||| | ||| |
|
|
| T |
16419600 |
tttttatagttatttttaagtagttttaagttgagttgaataaattcaaagtgcttttatagtcaaactgaac-aaaaagataattttagaaatgttcag |
16419698 |
T |
|
| Q |
118 |
ttgtgttagtcattcttg-ttctaattctctctaacctaacaaactcttggagtttttgtt |
177 |
Q |
| |
|
| |||||| ||||| || ||| ||||||| ||||| || ||| |||||||||||||||| |
|
|
| T |
16419699 |
tcgtgttattcatttgtgtttcaaattctccttaaccaaataaattcttggagtttttgtt |
16419759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 9954913 - 9954716
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||| ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
9954913 |
tttttacagtcaattttaagtagttttcagtttagttgaattaattcagaatgcttttatagtcaaactgagcaaaaaagatgattttaaaaatatccaa |
9954814 |
T |
|
| Q |
118 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttatttttataggtcgagttgataaagtgaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||| |||||||||||| ||||||| |||||||| |
|
|
| T |
9954813 |
ctgtgttagtcattcttgttctaattctctctaacctaacaaattcttggagtttttggtctctatctatttttataggctgagttgaagaagtgaac |
9954716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 23689311 - 23689166
Alignment:
| Q |
31 |
ttttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtcat |
130 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| || || |||||||| ||||||| ||||||||||||||||||||||||||| |||||| || || || |
|
|
| T |
23689311 |
ttttaagtagttttcagtaaagttgagtcaataaagggtatttttatagtcaaactaagcaaaaaagaggattttgaaaatatcaagttgtattggttat |
23689212 |
T |
|
| Q |
131 |
tcttgtt-ctaattctctctaacctaacaaactcttggagtttttg |
175 |
Q |
| |
|
||||||| |||||| |||||||| |||||| |||||||||||||| |
|
|
| T |
23689211 |
tcttgttgctaattatctctaactaaacaaattcttggagtttttg |
23689166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 23690503 - 23690399
Alignment:
| Q |
31 |
ttttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtcat |
130 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| || || || |
|
|
| T |
23690503 |
ttttaagtagttttcagtaaagttgagtcaataaagggtgtttttatagtcaaactaagcaaaaaagaggattttgaaaatatcaagttgtattggttat |
23690404 |
T |
|
| Q |
131 |
tcttg |
135 |
Q |
| |
|
||||| |
|
|
| T |
23690403 |
tcttg |
23690399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 23409020 - 23409179
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccag |
117 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||||||||||| |||||||||| ||||| | |||||| | |||| ||| ||||| ||||||| ||| |
|
|
| T |
23409020 |
tttttatagtcatttttaagtagttttaagttaagttgaattaattcagagtacttttaaagtcaaacccaacaaagttgagaattttaaaaatattcag |
23409119 |
T |
|
| Q |
118 |
ttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgtt |
177 |
Q |
| |
|
|||| || || ||| | ||||| || ||||||||| |||||| | ||||| ||| |||| |
|
|
| T |
23409120 |
ttgtattggttattttgtttctatttgtctctaaccaaacaaattgttggattttgtgtt |
23409179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 558909 - 559084
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaa-aaaagaggattttgaaaatatcca |
116 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
558909 |
tttttacattcatttttaagtagttttaagttaagttgaatcaattcagagtgcttttaaagtcaaactgagcaagaaaagaggattttgaaaatatcca |
559008 |
T |
|
| Q |
117 |
gttgtgttagtcattcttg-ttctaattctctctaacctaacaaactcttggagtttttgttgtttatttattttt |
191 |
Q |
| |
|
||||||| || ||||||| || || |||||||||||| |||||| | |||||||||||||| | |||| |||||| |
|
|
| T |
559009 |
attgtgttggttattcttgtttatagttctctctaaccaaacaaattgttggagtttttgttctctattcattttt |
559084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 22833643 - 22833522
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaa--aaaagaggattttgaaaatatcc |
115 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||||||||||||| ||||| ||||| | ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22833643 |
tttttacattcatttttaagtagttttaagttaagttgaatcaattctgagtgcttttaaagtcaaactgagcaaaaaaaagaggattttgaaaatatcc |
22833544 |
T |
|
| Q |
116 |
agttgtgttagtcattcttgtt |
137 |
Q |
| |
|
| ||||||| || ||||||||| |
|
|
| T |
22833543 |
aattgtgttggttattcttgtt |
22833522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 304
Target Start/End: Complemental strand, 467988 - 467876
Alignment:
| Q |
192 |
ataggtcgagttgataaagtgaacttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaat |
291 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||| | || || ||||||||||||| ||| | || ||||||||| |||||||||||| |||| |
|
|
| T |
467988 |
ataggttgaattgataaagtgaacttacactcgagaagttacgaatgattaattcaagcacataattgaagtcttgaagcatgaaagaccgatgaacaat |
467889 |
T |
|
| Q |
292 |
gttcaacacgaga |
304 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
467888 |
gttgaacaagaga |
467876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 468061 - 467989
Alignment:
| Q |
106 |
gaaaatatccagttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttg |
178 |
Q |
| |
|
|||||||| ||||||| || || ||| | |||||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
468061 |
gaaaatattcagttgtattggttattttgtttctaattgtctctaactaaacaaattcttggagtttttgttg |
467989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 11777096 - 11776957
Alignment:
| Q |
80 |
tcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtcattcttgtt-ctaattctctctaacctaacaaactcttggagtttttgttg |
178 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||| | |||| ||||| ||||| |||| | ||||||| ||||| || ||| |||||||||||||| | |
|
|
| T |
11777096 |
tcaaactgagcaaaaa-gagaattttagaaatgttcagtcatgttattcatttatgtttcaaattctccttaaccaaataaattcttggagtttttgctc |
11776998 |
T |
|
| Q |
179 |
tttattt-atttttataggtcgagttgataaagtgaactta |
218 |
Q |
| |
|
| ||||| |||||| ||||| |||||||||| ||||||||| |
|
|
| T |
11776997 |
tctatttaatttttttaggttgagttgataatgtgaactta |
11776957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 35022922 - 35023209
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataa-tcaaactgagcaaaaaagaggattttgaaaatatcca |
116 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||| || ||||| ||| | ||||||||||||| |||||| |
|
|
| T |
35022922 |
tttttacagtcatttttatgtagttttaagttaagttgaatcaattcagagtctttttgaaagtcaaattgat-ataaaagaggattttaaaaatacttg |
35023020 |
T |
|
| Q |
117 |
gttgtgttagtcattcttgttctaattctctctaacctaacaaactcttggagtttttgttgtttatttattttt-ataggtcgagttgataaagtgaac |
215 |
Q |
| |
|
||||||| || |||||||||||||| | | ||||| |||||| ||||| |||||||||| | |||| ||||| | |||| ||||| ||||||| ||| |
|
|
| T |
35023021 |
attgtgttggttattcttgttctaatcatttttaaccaaacaaattcttgaagtttttgttctctattcgtttttgacaggttgagttaataaagtaaac |
35023120 |
T |
|
| Q |
216 |
ttagtttcgagaagtcatgagtggttaattcaagcacggaatcaatgttttgaagcataaaagaccgatgagcaatgttcaacacgaga |
304 |
Q |
| |
|
||| ||| |||||||||| | |||||||||||||||| |||||| ||| |||||||| ||||| | |||| |||||||||||| |||| |
|
|
| T |
35023121 |
ttaattttgagaagtcatcaatggttaattcaagcacataatcaaagttgtgaagcatgaaagatcaatgaacaatgttcaacaagaga |
35023209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 33353296 - 33353402
Alignment:
| Q |
31 |
ttttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtcat |
130 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| || ||||||||||| ||||||| |||||||||||||||||||||||| || |||||| || || || |
|
|
| T |
33353296 |
ttttaaatagttttcagttaagttgagtcaataaagggtgtttttatagtcaaactaagcaaaaaagaggattttgaaaatttcaagttgtattggttat |
33353395 |
T |
|
| Q |
131 |
tcttgtt |
137 |
Q |
| |
|
||||||| |
|
|
| T |
33353396 |
tcttgtt |
33353402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 3343596 - 3343502
Alignment:
| Q |
41 |
ttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatatccagttgtgttagtcattcttgtt |
137 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| ||||||| |||| |||||||||| ||||| |||||| |||||| || |||||| ||||| |
|
|
| T |
3343596 |
ttttaagttaagttgaatcaattcatagtgtttttaaaatcaaattgag-aaaaaagagg-ttttggaaatatttagttgttttggtcatttttgtt |
3343502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 2867415 - 2867521
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgt-ttttataatcaaactgagcaaaaaagaggattttgaaaatatcca |
116 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| |||| | |||||||||| | ||| |||||||| ||||||| | |
|
|
| T |
2867415 |
tttttagagtcacttttaagtagttttaagttaaattgaatcaattcaaagtgtgttttggagtcaaactgag--ataaaaaggattttaaaaatattta |
2867512 |
T |
|
| Q |
117 |
gttgtgtta |
125 |
Q |
| |
|
||||||||| |
|
|
| T |
2867513 |
gttgtgtta |
2867521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 2879203 - 2879309
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgt-ttttataatcaaactgagcaaaaaagaggattttgaaaatatcca |
116 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| |||| | |||||||||| | ||| |||||||| ||||||| | |
|
|
| T |
2879203 |
tttttagagtcatttttaagtagttttaagttaaattgaatcaattcaaagtgtgttttggagtcaaactgag--ataaaaaggattttaaaaatattta |
2879300 |
T |
|
| Q |
117 |
gttgtgtta |
125 |
Q |
| |
|
||||||||| |
|
|
| T |
2879301 |
gttgtgtta |
2879309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 5592419 - 5592540
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagc--aaaaaagaggattttgaaaatatcc |
115 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||||||||||||| ||||| ||||| | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5592419 |
tttttacattcatttttaagtagttttaagttaagttgaatcaattctgagtgcttttaaagtcaaactgagcaaaaaaaagaggattttgaaaatatcc |
5592518 |
T |
|
| Q |
116 |
agttgtgttagtcattcttgtt |
137 |
Q |
| |
|
| ||||||| || ||||||||| |
|
|
| T |
5592519 |
aattgtgttggttattcttgtt |
5592540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 12179205 - 12179110
Alignment:
| Q |
18 |
tttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttataatcaaactgagcaaaaaagaggattttgaaaatat |
113 |
Q |
| |
|
|||||||| | | |||||||||||||| |||||||||||||||||| |||||| ||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
12179205 |
tttttacatttatttttaagtagttttaagttaagttgaatcaattgagagtgcttttaaaatcaaattaagcaaaaaagaggattttgaaaatat |
12179110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University