View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15835_high_1 (Length: 355)
Name: NF15835_high_1
Description: NF15835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15835_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 5954460 - 5954764
Alignment:
| Q |
19 |
gaacataaagcaacaaacaattacggaaatattaatttataattcaaattcaatgatgacaaccacattgactttccttcacaggnnnnnnnnnngttca |
118 |
Q |
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| T |
5954460 |
gaacataaaacaacaaacaattacgaaaatattaatttataattcaaattcaatgatgacaaccacatggactttccttcactggaaaaaaaaatgttca |
5954559 |
T |
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| Q |
119 |
aaacttttgtgcaacannnnnnnccatatttggtcaagaaccttagcagcagggaaagctttaacaacagagaaaggctcgtcaagtttaccaagaacca |
218 |
Q |
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| T |
5954560 |
aaacttttatgcaacatttttttccatatttggtcaagaaccttagcagcagggaaagctttaacaacagagaaaggctcaacaggtttaccaagaacca |
5954659 |
T |
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| Q |
219 |
aaattgcgaaatnnnnnnnttatggaaacaaaaattgaggattgaccatgataagaggatcaaactacatttaagcctaaattattgagtttaggggata |
318 |
Q |
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| T |
5954660 |
aaattgcgaaataaaaaa-tgatgggaacaaaaattgaggattgaccatgataagaggatcaaactacatttaagcctaaattattgagtttaggggata |
5954758 |
T |
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| Q |
319 |
taaaga |
324 |
Q |
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|||||| |
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| T |
5954759 |
taaaga |
5954764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 5689613 - 5689655
Alignment:
| Q |
44 |
gaaatattaatttataattcaaattcaatgatgacaaccacat |
86 |
Q |
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| T |
5689613 |
gaaatattaatttatggtccaaattcaatgatgacaaccacat |
5689655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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