View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15835_high_2 (Length: 308)
Name: NF15835_high_2
Description: NF15835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15835_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4259302 - 4259011
Alignment:
| Q |
1 |
gaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggagtt |
100 |
Q |
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| T |
4259302 |
gaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggagtt |
4259203 |
T |
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| Q |
101 |
acatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgccttg |
200 |
Q |
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| T |
4259202 |
acatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgccttg |
4259103 |
T |
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| Q |
201 |
ataattataaagtattatactacatacaaatatgctatataattagacgaaaatgatacctttcaacttctgattcatgtactccttggatg |
292 |
Q |
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| T |
4259102 |
ataattataaagtattatactacatacaaatatgctatataattagacgaaaatgatacctttcaacttctgattcatgtactccttggatg |
4259011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4262924 - 4262633
Alignment:
| Q |
1 |
gaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262924 |
gaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaatcaaaacgagagggagtt |
4262825 |
T |
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| Q |
101 |
acatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgccttg |
200 |
Q |
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| T |
4262824 |
acatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatagaagacaaactttgccttg |
4262725 |
T |
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| Q |
201 |
ataattataaagtattatactacatacaaatatgctatataattagacgaaaatgatacctttcaacttctgattcatgtactccttggatg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262724 |
ataattataaagtattatactacatacaaatatgctatataattagacgaaaatgatacctttcaacttctgattcatgtactccttggatg |
4262633 |
T |
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