View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15835_high_7 (Length: 236)
Name: NF15835_high_7
Description: NF15835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15835_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38369834 - 38369612
Alignment:
| Q |
1 |
aatggggaatagagagaaatgttttttctattactatggataatgtttcagctaatgatgaaacctcgcaaaacttgaaaaatcaactttgctcgcttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38369834 |
aatggggaatagagagaaatgttttttctattactatggataatgtttcagctaatgatgaaacctcgcaaaacttgaaaaatcaactttgctcgcttga |
38369735 |
T |
|
| Q |
101 |
tagtttgttgagaactttcatcacatcggcaacagcaccatctctagaaaaacattttaagtgttgtgctcgtgtcttggaccttatggttg-aagagag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38369734 |
tagtttgttgagaactttcatcacatcggcaacagcaccatctctagaaaaacattttaagtgttgtgctcgtgtcttggaccttatggttgaaagagag |
38369635 |
T |
|
| Q |
200 |
tttaaaggtagtaagtggtgtat |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38369634 |
tttaaaggtagtaagtggtgtat |
38369612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38374563 - 38374342
Alignment:
| Q |
1 |
aatggggaatagagagaaatgttttttctattactatggataatgtttcagctaatgatgaaacctcgcaaaacttgaaaaatcaactttgctcgcttga |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
38374563 |
aatggggaatagagaaaaatattttttctattactatggataatgcttcagctaatgatggcaactcacaaaacttgaaagatcaactttgctcgcttga |
38374464 |
T |
|
| Q |
101 |
tagtttgttgagaactttcatcacatcggcaacagcaccatctctagaaaaacattttaagtgttgtgctcgtgtcttggaccttatggttgaagagagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
38374463 |
tagtttgttgagaactttcatcacatcagcaacagcaccatctctagaaaaacattttaagtgttgtgctcatgtcttggatcttatggttcaagagagt |
38374364 |
T |
|
| Q |
201 |
ttaaaggtagtaagtggtgtat |
222 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
38374363 |
ttaaaggtagtaagtgatgtat |
38374342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38379727 - 38379512
Alignment:
| Q |
1 |
aatggggaatagagagaaatgttttttctattactatggataatgtttcagctaatgatgaaacctcgcaaaacttgaaaaatcaactttgctcgcttga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||||| |
|
|
| T |
38379727 |
aatggggaatagagagaaatattttttctatcactatggataatgcttcagctaatgatgacaacttacaaaacgtgaaaaatcaactttgctcgcttga |
38379628 |
T |
|
| Q |
101 |
tagtttgttgagaactttcatcacatcggcaacagcaccatctctagaaaaacattttaagtgttgtgctcgtgtcttggaccttatggttgaagagagt |
200 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||| |||||||| |
|
|
| T |
38379627 |
taatttgttgagaactttcatcacatcaacaacagcaccatctctagaaaaacatttcaagtgttgtgctcatatcttggatcttatggttcaagagagt |
38379528 |
T |
|
| Q |
201 |
ttaaaggtagtaagtg |
216 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
38379527 |
ttgaaggtagtaagtg |
38379512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University