View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15835_low_4 (Length: 287)
Name: NF15835_low_4
Description: NF15835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15835_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 39984552 - 39984819
Alignment:
| Q |
10 |
catcatcatcatctgctgcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatctt |
109 |
Q |
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| T |
39984552 |
catcatcatcaccgggagcagcacccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatctt |
39984651 |
T |
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| Q |
110 |
gtcctcaaactcatctgcctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagc |
209 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |
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| T |
39984652 |
gtcctcaaactcatcagcctctgcaagctggttggcatctagccactggatagcagcctcaatggtgtcctcgatcttctttttgtcatccgaatcaagc |
39984751 |
T |
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| Q |
210 |
tttcctgcaatcttgtcatccttaattgtgttcctcatgttgtatgcataattttccaatgcattctt |
277 |
Q |
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| T |
39984752 |
tttcctgcaattttttcatccttaatggtgttcctcatgttgtatgcatagttttccaatgcattctt |
39984819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 277
Target Start/End: Complemental strand, 8018634 - 8018408
Alignment:
| Q |
51 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
150 |
Q |
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| T |
8018634 |
ccaccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctctgccaactggttactgtcca |
8018535 |
T |
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| Q |
151 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgtt |
250 |
Q |
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| T |
8018534 |
accactgaattgcagcgtcaattgcatcatcaatcttctttttgtcctcaggtgaaagctttgaaccaatcttctcgtctttaattgtgttcctcatgtt |
8018435 |
T |
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| Q |
251 |
gtatgcataattttccaatgcattctt |
277 |
Q |
| |
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||| || || |||||||| |||||||| |
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| T |
8018434 |
gtaagcgtagttttccaaagcattctt |
8018408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 8101614 - 8101759
Alignment:
| Q |
51 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
150 |
Q |
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| T |
8101614 |
ccaccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttgcatcaa |
8101713 |
T |
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| Q |
151 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtc |
196 |
Q |
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|||| || || || ||||||| | |||||||||| ||||||||| |
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| T |
8101714 |
gccattgaatggctccctcaattgcatcctcaatctgcttcttgtc |
8101759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 34 - 254
Target Start/End: Complemental strand, 17706911 - 17706694
Alignment:
| Q |
34 |
ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc |
133 |
Q |
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||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
17706911 |
ccatgccaagaccagcaccaccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgc |
17706812 |
T |
|
| Q |
134 |
aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta |
233 |
Q |
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| T |
17706811 |
aagctgattggcgtctagccaccggatagtagcctcaatggtgtcctcaa---ttttcttgtctttggaatcaagctttcctgcaatcttttcatcctta |
17706715 |
T |
|
| Q |
234 |
attgtgttcctcatgttgtat |
254 |
Q |
| |
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|| |||| |||| |||||||| |
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| T |
17706714 |
atggtgtccctcgtgttgtat |
17706694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 17649568 - 17649309
Alignment:
| Q |
10 |
catcatcatcatctgctgcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatctt |
109 |
Q |
| |
|
||||||||||| ||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||| |
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| T |
17649568 |
catcatcatcacctggagcggcatccatgtcaagacctgcaccaccttggtacatcttggcaatgatagggttgccgacacctcgcggttccttcatctt |
17649469 |
T |
|
| Q |
110 |
gtcctcaaactcatctgcctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagc |
209 |
Q |
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||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
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| T |
17649468 |
atcctcaaactcatctgcctattcaagctggtt-gggtctagccactggatagcagcctcaatggtgtcctcaa---tcttcttgtctttggaatcaagc |
17649373 |
T |
|
| Q |
210 |
tttcctgcaatcttgtcatccttaattgtgttcctcatgttgtatgcataattttccaatgcattctt |
277 |
Q |
| |
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|||| ||||||||| ||||| ||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
17649372 |
tttcatgcaatcttttcatcattaatggtgttcctcatgttgt----atagttttccaatgcattctt |
17649309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 277
Target Start/End: Complemental strand, 23588953 - 23588728
Alignment:
| Q |
52 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag |
151 |
Q |
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||||||| |||||| | ||||||||||||||||| | | |||| |||||||||||||||||||| ||||| |||||| |||| || || |||| | |
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| T |
23588953 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23588854 |
T |
|
| Q |
152 |
ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg |
251 |
Q |
| |
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||| || ||||| ||||||| | || ||||| |||||||| ||||| | | | ||| ||||||||||| || || |||||||||||||||||| |
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| T |
23588853 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23588754 |
T |
|
| Q |
252 |
tatgcataattttccaatgcattctt |
277 |
Q |
| |
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|| ||||| || || | ||||||||| |
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| T |
23588753 |
taggcatagttctcaagtgcattctt |
23588728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 23597805 - 23597721
Alignment:
| Q |
52 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaag |
136 |
Q |
| |
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||||||| |||||| | ||||||||||||||||| | || |||| |||||||||||||||||||| ||||| |||||| |||| |
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| T |
23597805 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaag |
23597721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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