View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15835_low_5 (Length: 278)
Name: NF15835_low_5
Description: NF15835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15835_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 264
Target Start/End: Original strand, 38369981 - 38370228
Alignment:
| Q |
24 |
gaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcacat |
123 |
Q |
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| T |
38369981 |
gaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcacat |
38370080 |
T |
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| Q |
124 |
cagcgacaacattatctctagaaagagattgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatcc-------caaactgaaatggaat |
216 |
Q |
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| T |
38370081 |
cagcgacaacattatctctagaaagagatcgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatcccactcagcaaactgaaatggaat |
38370180 |
T |
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| Q |
217 |
gtaactttttatattcatttgagtaaccgaatcacgaaccatcctatg |
264 |
Q |
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| T |
38370181 |
gtaactttttatagtcatttgagtaaccgaatcacgaaccatcctatg |
38370228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 38379873 - 38380121
Alignment:
| Q |
23 |
agaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcaca |
122 |
Q |
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| T |
38379873 |
agaagaagtccaacaacgaaagctcaaacacactccaccctcaattgcagcaagctgttttttcaatttctctttttcaagcaagtaaactttcatcaca |
38379972 |
T |
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| Q |
123 |
tcagcgacaacattatctctagaaagagattgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatcc-------caaactgaaatggaa |
215 |
Q |
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| T |
38379973 |
tcattagcaacaccatatctagaaagaaattgagcctcattgaacgaaacaaatttagtgaattccctaaattcaccccactcaacagaccgaaatggaa |
38380072 |
T |
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| Q |
216 |
tgtaactttttatattcatttgagtaaccgaatcacgaaccatcctatg |
264 |
Q |
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| T |
38380073 |
gatgattttttatagtcatttgagtaattgattcacgaaccatcctatg |
38380121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 38374710 - 38374888
Alignment:
| Q |
24 |
gaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcacat |
123 |
Q |
| |
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||||||||||||||| |||| |||||||||| || ||| | | | |||| ||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
38374710 |
gaagaagtccaacaacgaaaactcaaacacattctaccttctattccagctagctgttttttcagtttatctttttgaagcaagtaaactttcatcacat |
38374809 |
T |
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| Q |
124 |
cagcgacaacattatctctagaaagagattgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatccca |
202 |
Q |
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| T |
38374810 |
catcagcaagaccatatctggatagaaattgagcctcattatcagaaacaaatttggtgaatgccctaaatttatccca |
38374888 |
T |
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