View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15836_high_1 (Length: 900)
Name: NF15836_high_1
Description: NF15836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15836_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 460 - 882
Target Start/End: Complemental strand, 37822787 - 37822367
Alignment:
| Q |
460 |
gaacctcaaaaattgaaaacatttgttgactaaggataattttgtttgaccctttgttatatcaagcagacaatgaagtttagcattgctaagttgacaa |
559 |
Q |
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| T |
37822787 |
gaacctcaaaaattgaaaacatttgttgactaaggataattttgtttgacccttcgttatatgaagcagacaatgaagtttagcattgctaagttgacaa |
37822688 |
T |
|
| Q |
560 |
attagcttcaagtttgtgttatagttaacgttttttatgccgttttcctcccttcatttgttcaatatttttcatctacctataaggttatccgccaatt |
659 |
Q |
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| T |
37822687 |
attagcttcaagtttgtgttatagttaacgttttttatgccgttttcctcccttcatttgttcaatatttttcatctacctataaggttatccgccaatt |
37822588 |
T |
|
| Q |
660 |
gcatcatgtaaaaggagaaggataaagcaaccaggttgcctatttgtaagcttcaaaagctctgctgggtaagttattgactttgaaaacatagtagctc |
759 |
Q |
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| T |
37822587 |
gcatcatgtaaaaggagaaagataaagcaaccaggttgcctatttgtaagcttcaaaagctctactgggtaagttattgactttgaaa--atagtagctc |
37822490 |
T |
|
| Q |
760 |
agatttctcagtaagaacgataagtttaatttttcaaattgctttaagtatggtattcgagagattctgataaagcaggataatgccaatgacactctgg |
859 |
Q |
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| T |
37822489 |
agatttctcagtaagaacgataagtttaatttttcaaattgctttaagtatggtattcgagagattctgataaagcaggataatgccaatgacactctgg |
37822390 |
T |
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| Q |
860 |
atgctttgcatagcagacgtctg |
882 |
Q |
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| T |
37822389 |
atgctttgcatagcagacgtctg |
37822367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 37823246 - 37822856
Alignment:
| Q |
1 |
agggaacaatgaaggcagtagaaaagatgaatcggtaggcaataagaatacttaagcttgttccatcatttattactatcttgaacataatattcaccaa |
100 |
Q |
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| T |
37823246 |
agggaacaatgaaggcagtagaaaagatgaatcggtatgcaataagaatacttaagcttgttccatcatttattactatcttgaacataatattcaccaa |
37823147 |
T |
|
| Q |
101 |
tgcatatatagattggaccactatcattagcagaacaggctttgcgctctctatggcttcaacattgaataaattgaccatattgaaatgaaaatgggta |
200 |
Q |
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| T |
37823146 |
tgcatatatagattggaccactatcattagcagaacaggctttgcgctctctatggcttcaacattgaataaattgaccatattgaaatgaaaatgggta |
37823047 |
T |
|
| Q |
201 |
ccggattcataaacactttttgtgtcacctatacatataacaaaatttaaggacaccgaacttataaaaataaattaagaaagtattgttgacaaaagtg |
300 |
Q |
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| T |
37823046 |
ccggattcatgaacactttttgtgtcacctatacatataacaaaatttaaggacaccgaacttataaaaaaaaattaagaaagtattgttgacaaaagtg |
37822947 |
T |
|
| Q |
301 |
gatatagtttatttatactttcnnnnnnncagtttggaataaaataagggttggaataagccggaccgtgtgacatggcctatgtctggtc |
391 |
Q |
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| T |
37822946 |
gatatagtttatttatactttctttttttcagtttggaataaaataagggttggaataagccggaccgtctgacatggcctatgtctggtc |
37822856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 37817982 - 37817801
Alignment:
| Q |
3 |
ggaacaatgaaggcagtagaaaagatgaatcggtaggcaataagaatacttaagcttgttccatcatttattactatcttgaacataatattcaccaatg |
102 |
Q |
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|||||| |||| ||||||||||| | |||||||| |||||||||| ||||||||||| |||||||||| |||| ||||| ||||| |||||||||| || |
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| T |
37817982 |
ggaacagtgaaagcagtagaaaaaacaaatcggtaagcaataagaacacttaagcttgatccatcatttgttaccatctttaacatgatattcaccactg |
37817883 |
T |
|
| Q |
103 |
catatatagattggaccactatcattagcagaacaggctttgcgctctctatggcttcaacattgaataaattgaccatatt |
184 |
Q |
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||||||| || |||||||||||||| | || ||||||||| | ||||||||||||||||||||||| ||||| |||||||| |
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| T |
37817882 |
catatattgactggaccactatcatcaacacaacaggcttcacactctctatggcttcaacattgaacaaattaaccatatt |
37817801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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