View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15836_low_2 (Length: 459)
Name: NF15836_low_2
Description: NF15836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15836_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 36278209 - 36278660
Alignment:
| Q |
1 |
tacttttctggctgttttgcttcgatgtacttttgttttcatattggttgattaagtcgacttgttggttgaaatgaaacgtgttctcattgtagtgatt |
100 |
Q |
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| T |
36278209 |
tacttttctggctgttttgcttcaatgtacttttgttttcatattggttgattaagtcgccttgttggttgaaatgaaatgtgttctcattgtagtgatt |
36278308 |
T |
|
| Q |
101 |
ttgcgttaaactacttaaatggtacaatcccgaaggaatgggcttcaaccgaactaacttcaatgtaagttctttataaaccaattgaagttttcattta |
200 |
Q |
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| T |
36278309 |
ttgcgttaaactacctaaatggtacaatcccgaaggaatgggcttcaaccgaactaacttcaatgtaagttctttataaaccaattgaagttttcattta |
36278408 |
T |
|
| Q |
201 |
gttactttgccttttgtattaaataaataca-cgtattatgcagctcgctatttgttaatcatttatcaggggagattcctaaggaaatgggaaatattt |
299 |
Q |
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| T |
36278409 |
gttactttgccttttgtattaaataaatacaccgtgttatgcagctcgctatttgttaatcgtttatcaggggagattcctaaggaattgggaaatatta |
36278508 |
T |
|
| Q |
300 |
ccactctaagataactgtaagtttataaattaattgttctcataattactttttaaaaatactctgaaaatttatgttggttaaagttcaatactcaatt |
399 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
36278509 |
ccactctaagatacctgtaagtttataaattaatttttctcataatttctttttaaaaatactctgaaaatttatgttggtcaaagttcaatattcaatt |
36278608 |
T |
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| Q |
400 |
gtgaaattatgtttctggctatatattacttgtgtaatgtatattgcaatat |
451 |
Q |
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| T |
36278609 |
gtgaaattatgtttctggctatatattacttgtgtaatgtatattgcaatat |
36278660 |
T |
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